MD11G1288100.v1.1

Phenazine biosynthesis-like domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0028895
Physical Location & Seq
Reverse (-)
40784120 .. 40785217
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1288100.v1.1.491

Sequence Viewer

Length: 612 bp
ATGGATGAGTGCGGGTGGATGCTTTCACTGGCTGACTTAGCTGTCAAGGGGAACCCAGCAGCAGTTTGCTTGCTGGAGGAAGAGAGAGACGACCGGTGGTTGCAGGCAGCGACCTCAGAGTTCAATCTCTACGAGACATGTTACTTGACTCAGCTCATTGACTCGGACACAGCTCCAAGGTTCGGTGTTGAGCTTTGTGGCCATGCAACATTAGCTGCTTCATACACTCTCTTTAAGTCTGGTTTGATATTTTCCGACATTATCGAGTTTTCAACTTTGTCTGGAATCCTAACAGCTAAAAAGGTTCTAGATGTTAAGACAGCCAATGATGAAGCACAAGAATCCTCCTATTTCATTGAACTGCACTTTCCTGCTGCCCCGTCTAATGAATTCAACTCTGATGAGGTTTCGGTTTATCTCCACGCCTTGAATGGCGCTTTTCTATTAATGAAAGGAGGGCAACTATCACAGGTTTATCTCCACGCCTTGAATGGCGCTTTTCTATTAATGAAAGAAGGAGGGCAACTGTCACAGGATGATCTACTTGTAGGTCATGCAATCCTTCTAGGAACCTGCATTTTCGGTTCCATATTATCAGTTCAATCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PhzC-PhzF

Protein Analysis

204

Amino Acids

22.08

Weight (kDa)

4.41

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhzC-PhzF PF02567 11 - 173 2.8e-27 Phenazine biosynthesis-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028895)

Species Orthologous Gene IDs
malus_domestica MD11G1288100.v1.1
pyrus_communis pycom11g25590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 581
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 7 cut(s) 124, 273, 359, 394, 430, 490, 602
AluBI AGCT 6 cut(s) 41, 154, 173, 193, 215, 296
AluI AGCT 6 cut(s) 41, 154, 173, 193, 215, 296
Alw26I GTCTC 2 cut(s) 81, 128
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 59, 107, 215, 374
ApoI RAATTY 1 cut(s) 389
AseI ATTAAT 2 cut(s) 446, 506
AsiGI ACCGGT 1 cut(s) 93
AspLEI GCGC 2 cut(s) 437, 497
BalI TGGCCA 1 cut(s) 201
BbvI GCAGC 4 cut(s) 71, 119, 202, 361
BcoDI GTCTC 2 cut(s) 81, 128
BfaI CTAG 2 cut(s) 308, 566
BfoI RGCGCY 2 cut(s) 438, 498
BfuAI ACCTGC 1 cut(s) 581
BisI GCNGC 4 cut(s) 60, 108, 216, 375
BlsI GCNGC 4 cut(s) 61, 109, 217, 376
BmiI GGNNCC 3 cut(s) 53, 571, 586
BmsI GCATC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 3 cut(s) 10, 24, 541
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 129, 164
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 4 cut(s) 71, 119, 202, 361
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 81, 128
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 538
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 128, 163
BspLI GGNNCC 3 cut(s) 53, 571, 586
BspMI ACCTGC 1 cut(s) 581
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 1 cut(s) 538
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 71, 105
BstDEI CTNAG 3 cut(s) 37, 115, 150
BstF5I GGATG 3 cut(s) 10, 24, 541
BstH2I RGCGCY 2 cut(s) 438, 498
BstHHI GCGC 2 cut(s) 437, 497
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 2 cut(s) 81, 128
BstMBI GATC 1 cut(s) 538
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 38, 212
BstNSI RCATGY 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 71, 119, 202, 361
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 10, 24, 541
BtsIMutI CAGTG 1 cut(s) 26
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 2 cut(s) 71, 105
CfoI GCGC 2 cut(s) 437, 497
Cfr10I RCCGGY 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 3 cut(s) 138, 203, 554
CviJI RGCY 9 cut(s) 32, 41, 154, 173, 193, 201, 215, 296, 323
CviKI_1 RGCY 9 cut(s) 32, 41, 154, 173, 193, 201, 215, 296, 323
DdeI CTNAG 3 cut(s) 37, 115, 150
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 141, 206, 557
FaiI YATR 6 cut(s) 139, 204, 223, 555, 590, 610
FatI CATG 3 cut(s) 137, 202, 553
FauI CCCGC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 60, 108, 216, 375
FokI GGATG 3 cut(s) 17, 31, 548
Fsp4HI GCNGC 4 cut(s) 60, 108, 216, 375
FspBI CTAG 2 cut(s) 308, 566
GlaI GCGC 2 cut(s) 436, 496
GluI GCNGC 4 cut(s) 60, 108, 216, 375
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 2 cut(s) 438, 498
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 94
HhaI GCGC 2 cut(s) 437, 497
Hin1II CATG 3 cut(s) 141, 206, 557
Hin6I GCGC 2 cut(s) 435, 495
HinP1I GCGC 2 cut(s) 435, 495
HinfI GANTC 4 cut(s) 148, 161, 285, 341
HpaII CCGG 1 cut(s) 94
Hpy188I TCNGA 4 cut(s) 118, 166, 256, 400
Hpy188III TCNNGA 2 cut(s) 282, 308
HpyAV CCTTC 2 cut(s) 509, 572
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 5 cut(s) 103, 206, 364, 557, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 212
HpyF3I CTNAG 3 cut(s) 37, 115, 150
Hsp92II CATG 3 cut(s) 141, 206, 557
HspAI GCGC 2 cut(s) 435, 495
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 178
Lsp1109I GCAGC 4 cut(s) 71, 119, 202, 361
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 308, 566
MaeIII GTNAC 2 cut(s) 140, 528
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 389
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 142, 155
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 6 cut(s) 70, 124, 355, 397, 449, 512
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 4 cut(s) 234, 315, 446, 506
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 38, 212
NdeII GATC 1 cut(s) 538
NlaIII CATG 3 cut(s) 141, 206, 557
NlaIV GGNNCC 3 cut(s) 53, 571, 586
NmuCI GTSAC 1 cut(s) 528
NspI RCATGY 1 cut(s) 141
PciI ACATGT 1 cut(s) 137
PfeI GAWTC 2 cut(s) 285, 341
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 4 cut(s) 61, 109, 217, 376
PleI GAGTC 2 cut(s) 142, 155
PpsI GAGTC 2 cut(s) 142, 155
PscI ACATGT 1 cut(s) 137
PshBI ATTAAT 2 cut(s) 446, 506
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 53, 571, 586
SaqAI TTAA 4 cut(s) 234, 315, 446, 506
SatI GCNGC 4 cut(s) 60, 108, 216, 375
Sau3AI GATC 1 cut(s) 538
SchI GAGTC 2 cut(s) 142, 155
SfaNI GCATC 1 cut(s) 9
Sse9I AATT 1 cut(s) 389
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 308, 566
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 389
TfiI GAWTC 2 cut(s) 285, 341
Tru1I TTAA 4 cut(s) 234, 315, 446, 506
Tru9I TTAA 4 cut(s) 234, 315, 446, 506
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 4 cut(s) 59, 107, 215, 374
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 6 cut(s) 210, 343, 345, 402, 464, 524
TspRI CASTG 1 cut(s) 33
VspI ATTAAT 2 cut(s) 446, 506
XapI RAATTY 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 2 cut(s) 428, 488
XspI CTAG 2 cut(s) 308, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.