pycom11g25590

Phenazine biosynthesis-like domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
28353652 .. 28353954
303 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25590.1

Sequence Viewer

Length: 303 bp
ATGATCGCGTTTTCAACTTTGTCTGGAATCCTAACAGCTAAAAAGGTTCTAGATGTTAAGACAGCCAATGGTGAAGCACAAGAATCCTCCTATTTCATTGAACTGCACCTTCCTGCTGCCCCGTCTAATGAATTCAACTCTGATGAGGTTTCGGTTTATCTCCACGCCTTGAATGGCACTTTTCTATCATTGAAAGAAGGAGGGCAACTGTCACAGGATGATCTACTTGTAGGTCATGCAATCCTTCCAGGAACCTGCATTTTCGGTTCCATATTGAAGATGAGCAAACAAGGAATGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

10.74

Weight (kDa)

5.13

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028895)

Species Orthologous Gene IDs
malus_domestica MD11G1288100.v1.1
pyrus_communis pycom11g25590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccII CGCG 1 cut(s) 8
AcsI RAATTY 1 cut(s) 131
AgsI TTSAA 6 cut(s) 15, 101, 136, 172, 193, 277
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 83
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 253, 268
BmrFI CCNGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 8
Bsp143I GATC 2 cut(s) 3, 220
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 253, 268
BspMI ACCTGC 1 cut(s) 263
BssMI GATC 2 cut(s) 3, 220
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 210
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 2 cut(s) 6, 223
BstMBI GATC 2 cut(s) 3, 220
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 223
BveI ACCTGC 1 cut(s) 263
CspCI CAANNNNNGTGG 1 cut(s) 278
CviAII CATG 1 cut(s) 236
CviJI RGCY 2 cut(s) 38, 65
CviKI_1 RGCY 2 cut(s) 38, 65
DpnI GATC 2 cut(s) 5, 222
DpnII GATC 2 cut(s) 3, 220
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 237, 272
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 239
HinfI GANTC 2 cut(s) 27, 83
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 24, 50
HpyAV CCTTC 3 cut(s) 119, 191, 254
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 106, 239, 258
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 3, 220
LpnPI CCDG 6 cut(s) 9, 126, 200, 234, 261, 268
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 210
MalI GATC 2 cut(s) 5, 222
MboI GATC 2 cut(s) 3, 220
MboII GAAGA 1 cut(s) 289
MluCI AATT 1 cut(s) 131
MnlI CCTC 3 cut(s) 97, 139, 194
MseI TTAA 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 8
NdeII GATC 2 cut(s) 3, 220
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 253, 268
NmuCI GTSAC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 27, 83
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 253, 268
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 3, 220
ScrFI CCNGG 1 cut(s) 249
SetI ASST 6 cut(s) 40, 48, 111, 150, 235, 257
Sse9I AATT 1 cut(s) 131
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 210
TasI AATT 1 cut(s) 131
TfiI GAWTC 2 cut(s) 27, 83
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 2 cut(s) 85, 144
XapI RAATTY 1 cut(s) 131
XbaI TCTAGA 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.