Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015067

Physical Location & Seq

Genomic Coordinates Forward (+)

41347738 .. 41347935

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1295300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCTCTAATGGGTGGTTTTGCTAGAATAGGCAATAATGAGATCACGGTTTTAGTAAATGATGCAGAGAAGGGTAGTGACATTGATCCACAAGAAGCTCAACAAACTCTTGAAACAATGGAAGCTAATTTGAGGAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATTTAGCTCTCAGACGAGCTAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_DE_N

Protein Analysis

66

Amino Acids

7.16

Weight (kDa)

5.31

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_DE	PF00401	27 - 64	3e-07	ATP synthase, Delta/Epsilon chain, long alpha-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00470
malus_domestica	MD11G1295300.v1.1
rosa_chinensis	RchiOBHm_Chr3g0497001 RchiOBHm_CPg0502131
rosa_laevigata	RLG00000000067 RLG00000000108 RLG00000000165 RLG00000000223 RLG00000000259 RLG00000000269 RLG00000000292 RLG00000000324 RLG00000000331 RLG00000000348 RLG00000037107
rosa_roxburghii	Rroxscaffold_1G00030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	5 cut(s)	98, 125, 140, 176, 188
AluI	AGCT	5 cut(s)	98, 125, 140, 176, 188
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	24, 189
BmsI	GCATC	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	42, 85
BspCNI	CTCAG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	80
BssMI	GATC	2 cut(s)	42, 85
Bst4CI	ACNGT	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	45, 88
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	42, 85
BstMWI	GCNNNNNNNGC	1 cut(s)	173
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	6 cut(s)	5, 98, 125, 140, 176, 188
CviKI_1	RGCY	6 cut(s)	5, 98, 125, 140, 176, 188
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	44, 87
DpnII	GATC	2 cut(s)	42, 85
Eco57I	CTGAAG	1 cut(s)	162
FaeI	CATG	1 cut(s)	198
FaiI	YATR	1 cut(s)	196
FatI	CATG	1 cut(s)	194
FspBI	CTAG	2 cut(s)	24, 189
Hin1II	CATG	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	64, 137
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	42, 85
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	24, 189
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	44, 87
MboI	GATC	2 cut(s)	42, 85
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	3 cut(s)	127, 159, 169
MnlI	CCTC	2 cut(s)	126, 157
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	42, 85
NlaIII	CATG	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	42, 85
SetI	ASST	5 cut(s)	100, 127, 142, 178, 190
SfaNI	GCATC	1 cut(s)	52
SgeI	CNNG	5 cut(s)	36, 58, 104, 122, 160
Sse9I	AATT	3 cut(s)	127, 159, 169
SspMI	CTAG	2 cut(s)	24, 189
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	3 cut(s)	127, 159, 169
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	2 cut(s)	24, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.