Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015067

Physical Location & Seq

Genomic Coordinates Forward (+)

48527214 .. 48527567

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACCTTAAATCTTTGTGTACTGACCCCGAATCGCATTGTTTGGGATTCAGAAGTGAAAGAAATTATTTTATCTACTAATAGTGGACAAATTGGCGTATTACCAAATCATGCGCCTATTGCCACAGCTGTAGATATCGATATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGATCACGGTTTTAGTAAATGCGCGGCACTGTTCACTCAGCGGTCAACTTCTCCGATGGTCACCAAATTTTGACAGCAGCTTCATCTCAACCCCCCTAGCATTTTTCTCAACTACACCAAGTTCAGAAAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_DE ATP-synt_DE_N

Protein Analysis

117

Amino Acids

12.88

Weight (kDa)

5.49

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_DE_N	PF02823	3 - 79	9.3e-24	ATP synthase, Delta/Epsilon chain, beta-sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00470
malus_domestica	MD11G1295300.v1.1
rosa_chinensis	RchiOBHm_Chr3g0497001 RchiOBHm_CPg0502131
rosa_laevigata	RLG00000000067 RLG00000000108 RLG00000000165 RLG00000000223 RLG00000000259 RLG00000000269 RLG00000000292 RLG00000000324 RLG00000000331 RLG00000000348 RLG00000037107
rosa_roxburghii	Rroxscaffold_1G00030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	241
AciI	CCGC	2 cut(s)	241, 258
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	21
AluBI	AGCT	2 cut(s)	128, 297
AluI	AGCT	2 cut(s)	128, 297
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	2 cut(s)	115, 241
AsuHPI	GGTGA	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	172, 181, 267
BfaI	CTAG	3 cut(s)	201, 314, 352
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	242, 295
BlsI	GCNGC	2 cut(s)	243, 296
Bsa29I	ATCGAT	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	241, 258
BspCNI	CTCAG	1 cut(s)	267
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	241
BssMI	GATC	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	226, 248
BstDEI	CTNAG	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	115, 241
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	244
CfoI	GCGC	2 cut(s)	115, 241
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	3 cut(s)	128, 182, 297
CviKI_1	RGCY	3 cut(s)	128, 182, 297
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	136
Eco91I	GGTNACC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	136
FaeI	CATG	1 cut(s)	113
FaiI	YATR	1 cut(s)	111
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	242, 295
Fsp4HI	GCNGC	2 cut(s)	242, 295
FspBI	CTAG	3 cut(s)	201, 314, 352
GlaI	GCGC	2 cut(s)	114, 240
GluI	GCNGC	2 cut(s)	242, 295
HhaI	GCGC	2 cut(s)	115, 241
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	113, 239
HinP1I	GCGC	2 cut(s)	113, 239
HincII	GTYRAC	2 cut(s)	174, 263
HindII	GTYRAC	2 cut(s)	174, 263
HinfI	GANTC	2 cut(s)	31, 47
HpaI	GTTAAC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	5 cut(s)	20, 86, 174, 251, 263
Hpy188I	TCNGA	4 cut(s)	52, 186, 272, 343
Hpy8I	GTNNAC	5 cut(s)	20, 86, 174, 251, 263
HpyCH4III	ACNGT	2 cut(s)	226, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	2 cut(s)	113, 239
KspAI	GTTAAC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	306
MaeI	CTAG	3 cut(s)	201, 314, 352
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MluCI	AATT	3 cut(s)	63, 90, 283
MseI	TTAA	3 cut(s)	8, 159, 173
MspA1I	CMGCKG	2 cut(s)	128, 258
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	31, 47
PkrI	GCNGC	2 cut(s)	243, 296
PspEI	GGTNACC	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	8, 159, 173
SatI	GCNGC	2 cut(s)	242, 295
Sau3AI	GATC	1 cut(s)	219
SetI	ASST	3 cut(s)	8, 130, 299
SfcI	CTRYAG	1 cut(s)	129
SgeI	CNNG	7 cut(s)	40, 122, 213, 235, 252, 326, 348
Sse9I	AATT	3 cut(s)	63, 90, 283
SsiI	CCGC	2 cut(s)	241, 258
SspMI	CTAG	3 cut(s)	201, 314, 352
TaaI	ACNGT	2 cut(s)	226, 248
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	63, 90, 283
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	31, 47
Tru1I	TTAA	3 cut(s)	8, 159, 173
Tru9I	TTAA	3 cut(s)	8, 159, 173
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	3 cut(s)	201, 314, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.