Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028912

Physical Location & Seq

Genomic Coordinates Forward (+)

42233832 .. 42234702

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1308700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTATCTATTGCAAAATATTTGCATAATACTCACGCAAAAACACATTCAAGTTACACTGTTGATATCGTTCAAATATTCCGCACATCAAAAGAGGGTGAAGTTGAACGCTTCAGAAGCACTAAAGGAGTTGGGGGAACTGAACCAGATTTTTCAGAAGCTCAGTTGCTAGATGATGGCGTCGTGGTTCCTCTAGGAAAGCCGAAAGAGAATACAAGCCGCCCGAAGGTTCATTACTGTACAATGAGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

PARP PARP_reg SAP WGR

Protein Analysis

85

Amino Acids

9.34

Weight (kDa)

7.91

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	3 - 42	8.9e-07	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028912)

Species	Orthologous Gene IDs
malus_domestica	MD11G1308700.v1.1
pyrus_communis	pycom11g27000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 220
AcuI	CTGAAG	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	241, 250
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	51, 74, 107
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	110
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BccI	CCATC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	170, 194
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	226
Bsp1407I	TGTACA	1 cut(s)	239
BspACI	CCGC	2 cut(s)	82, 220
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	239
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	61, 239
BstACI	GRCGYC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	57
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	240, 249
CviJI	RGCY	3 cut(s)	161, 202, 219
CviKI_1	RGCY	3 cut(s)	161, 202, 219
CviQI	GTAC	2 cut(s)	240, 249
DdeI	CTNAG	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	67
FaiI	YATR	2 cut(s)	27, 253
Fnu4HI	GCNGC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	170, 194
GluI	GCNGC	1 cut(s)	220
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	180
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	116, 157
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	61, 239
HpyCH4V	TGCA	2 cut(s)	14, 25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	180
LpnPI	CCDG	1 cut(s)	159
MaeI	CTAG	2 cut(s)	170, 194
MaeIII	GTNAC	1 cut(s)	53
MnlI	CCTC	2 cut(s)	88, 201
MwoI	GCNNNNNNNGC	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	189
RsaI	GTAC	2 cut(s)	241, 250
RsaNI	GTAC	2 cut(s)	240, 249
SatI	GCNGC	1 cut(s)	220
SetI	ASST	2 cut(s)	163, 231
SgeI	CNNG	8 cut(s)	47, 63, 158, 182, 196, 206, 228, 235
SsiI	CCGC	2 cut(s)	82, 220
SspI	AATATT	2 cut(s)	20, 78
SspMI	CTAG	2 cut(s)	170, 194
TaaI	ACNGT	2 cut(s)	61, 239
TatI	WGTACW	2 cut(s)	239, 248
TauI	GCSGC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	64
XspI	CTAG	2 cut(s)	170, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.