Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028912

Physical Location & Seq

Genomic Coordinates Forward (+)

29410349 .. 29411078

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTCAGCAGCAGAAGCTTCACCGGTTAATAGAAAGAGGGGAAGGAAGTCAAGTGAAGAGGGGGGAGGTGGGACTCAACTGGGTCCGAGAAAATGAAGGCCACCGAAATGTATGTGCTTCACTTTTGAGGGACTGCACTGCACATGTATGTGCTTCACTTTTTCTTTATTGGACCCTCCCATCTATGGCTGATAACACTGAAGGAGTTGGGGGAACTGAACCAGATTTTTCAGAAGCTCAGCTACTAGATGATGGCGTCGTGGTTCCTCTAGGAAAGCCGAAAGAGAATACAAGCCGCCCGAAGGTAGAAATACATCGTTTTCCAGAACTTGTTAAACGAGGCAGGCAGCTTCATTGTAAATTGATTTTGTTTATGTGCTTCATTCAGGTTTCATTACAGTACAATGAGTACATGGTTTACAATGTGAAACGGATTAGAATGCGCTACGTTGTTCAAGTGAATTTCAATTTGAAGATACGATTAGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

PARP PARP_reg SAP WGR

Protein Analysis

165

Amino Acids

18.98

Weight (kDa)

9.2

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028912)

Species	Orthologous Gene IDs
malus_domestica	MD11G1308700.v1.1
pyrus_communis	pycom11g27000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	404, 413
AfiI	CCNNNNNNNGG	2 cut(s)	187, 304
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	458, 469, 475
AluBI	AGCT	4 cut(s)	19, 239, 244, 352
AluI	AGCT	4 cut(s)	19, 239, 244, 352
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	10, 349
ApoI	RAATTY	1 cut(s)	463
AsiGI	ACCGGT	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	85, 174
AsuHPI	GGTGA	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	85, 174
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbvI	GCAGC	2 cut(s)	22, 361
BccI	CCATC	2 cut(s)	190, 248
BfaI	CTAG	2 cut(s)	248, 272
BisI	GCNGC	3 cut(s)	11, 298, 350
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	3 cut(s)	12, 299, 351
Bme18I	GGWCC	2 cut(s)	85, 174
BmgT120I	GGNCC	2 cut(s)	85, 174
BmiI	GGNNCC	3 cut(s)	86, 176, 267
BmrI	ACTGGG	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 304
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	187, 304
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	22, 361
BsgI	GTGCAG	2 cut(s)	121, 126
BshFI	GGCC	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	2 cut(s)	87, 146
BslI	CCNNNNNNNGG	2 cut(s)	187, 304
BsmFI	GGGAC	2 cut(s)	87, 146
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	102
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	86, 176, 267
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	22, 361
BsuRI	GGCC	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 198
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	85, 174
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	403, 412
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	2 cut(s)	146, 415
CviJI	RGCY	8 cut(s)	19, 102, 191, 239, 244, 280, 297, 352
CviKI_1	RGCY	8 cut(s)	19, 102, 191, 239, 244, 280, 297, 352
CviQI	GTAC	2 cut(s)	403, 412
DdeI	CTNAG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	85, 174
Eco57I	CTGAAG	1 cut(s)	222
FaeI	CATG	2 cut(s)	149, 418
FaiI	YATR	6 cut(s)	115, 147, 151, 188, 377, 416
FaqI	GGGAC	2 cut(s)	87, 146
FatI	CATG	2 cut(s)	145, 414
Fnu4HI	GCNGC	3 cut(s)	11, 298, 350
Fsp4HI	GCNGC	3 cut(s)	11, 298, 350
FspBI	CTAG	2 cut(s)	248, 272
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	11, 298, 350
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	149, 418
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	89, 235
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	38, 92, 197, 298
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	2 cut(s)	138, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	149, 418
HspAI	GCGC	1 cut(s)	445
LpnPI	CCDG	6 cut(s)	38, 67, 237, 331, 339, 374
Lsp1109I	GCAGC	2 cut(s)	22, 361
MaeI	CTAG	2 cut(s)	248, 272
MaeII	ACGT	1 cut(s)	450
MboII	GAAGA	2 cut(s)	70, 487
MluCI	AATT	3 cut(s)	362, 463, 469
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	7 cut(s)	32, 54, 61, 123, 188, 279, 335
MseI	TTAA	2 cut(s)	29, 336
MslI	CAYNNNNRTG	3 cut(s)	108, 148, 150
MspI	CCGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	149, 418
NlaIV	GGNNCC	3 cut(s)	86, 176, 267
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	447
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	12, 299, 351
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	86, 176, 267
PspPI	GGNCC	2 cut(s)	85, 174
RsaI	GTAC	2 cut(s)	404, 413
RsaNI	GTAC	2 cut(s)	403, 412
RseI	CAYNNNNRTG	3 cut(s)	108, 148, 150
SaqAI	TTAA	2 cut(s)	29, 336
SatI	GCNGC	3 cut(s)	11, 298, 350
Sau96I	GGNCC	2 cut(s)	85, 174
SchI	GAGTC	1 cut(s)	69
SetI	ASST	8 cut(s)	21, 72, 241, 246, 309, 354, 393, 453
SinI	GGWCC	2 cut(s)	85, 174
SmiMI	CAYNNNNRTG	3 cut(s)	108, 148, 150
Sse9I	AATT	3 cut(s)	362, 463, 469
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	2 cut(s)	248, 272
TaaI	ACNGT	1 cut(s)	402
TaiI	ACGT	1 cut(s)	453
TasI	AATT	3 cut(s)	362, 463, 469
TatI	WGTACW	2 cut(s)	402, 411
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	2 cut(s)	29, 336
Tru9I	TTAA	2 cut(s)	29, 336
TscAI	CASTG	2 cut(s)	145, 205
TseI	GCWGC	2 cut(s)	10, 349
TspDTI	ATGAA	4 cut(s)	111, 344, 373, 384
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	145, 205
VpaK11BI	GGWCC	2 cut(s)	85, 174
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	2 cut(s)	248, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.