MD12G1087100.v1.1

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0024419
Physical Location & Seq
Forward (+)
10678205 .. 10678489
285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1087100.v1.1.491

Sequence Viewer

Length: 285 bp
ATGAAGCCCCCCACCATGTGCGATGAGTACTACTCGTGCCCCGTAGGAACTACATGCTGCTGCGCCTATGAGTATGGTAACTACTGCTTTGGATGGGGATGTTGCCCTCTAGAGTCTGCAACCTGCTGTGATGACCATTACAGTTGCTGCCCTCATGAGTACCCCGTTTGCGACCTTGATGCCGGAACTTGCCGATTGGTAATGAATCGTACTCAGGGCCGGCCCAGGCCCAGTGCCACAGGGGCAACTGTCCAGGGCCCCAAAATGAAGAGGGCACCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010494 GO:0010498 GO:0010605 GO:0016020 GO:0016049 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030163 GO:0031146 GO:0031224 GO:0031225 GO:0031347 GO:0031348 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0040007 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0060560 GO:0065007 GO:0070011 GO:0070647 GO:0071695 GO:0071704 GO:0080090 GO:0080134 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

95

Amino Acids

10.35

Weight (kDa)

5.58

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Granulin PF00396 18 - 64 4.8e-10 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024419)

Species Orthologous Gene IDs
malus_domestica MD12G1087100.v1.1
pyrus_communis pycom05g08630
rosa_samantha Rh6CG492400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 274
AdeI CACNNNGTG 1 cut(s) 18
AfaI GTAC 3 cut(s) 29, 161, 211
AjnI CCWGG 2 cut(s) 224, 252
AlwNI CAGNNNCTG 1 cut(s) 147
AoxI GGCC 4 cut(s) 217, 221, 227, 256
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 57, 60, 147
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 5 cut(s) 217, 222, 228, 256, 257
BaeGI GKGCMC 3 cut(s) 41, 260, 277
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 260
BauI CACGAG 1 cut(s) 34
BbvI GCAGC 3 cut(s) 44, 47, 134
BccI CCATC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 226, 254
BfaI CTAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 131
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 58, 61, 148
BlsI GCNGC 3 cut(s) 59, 62, 149
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 226, 254
BmgT120I GGNCC 5 cut(s) 217, 222, 228, 256, 257
BmiI GGNNCC 3 cut(s) 258, 259, 276
BmrFI CCNGG 2 cut(s) 226, 254
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BsaJI CCNNGG 2 cut(s) 224, 253
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 226, 254
BseDI CCNNGG 2 cut(s) 224, 253
BseGI GGATG 2 cut(s) 98, 104
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 3 cut(s) 41, 260, 277
BseXI GCAGC 3 cut(s) 44, 47, 134
BshFI GGCC 4 cut(s) 219, 223, 229, 258
BshNI GGYRCC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 183, 220
BsnI GGCC 4 cut(s) 219, 223, 229, 258
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 41, 260, 277
BspANI GGCC 4 cut(s) 219, 223, 229, 258
BspCNI CTCAG 1 cut(s) 226
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 258, 259, 276
BspMI ACCTGC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 224, 253
BssSI CACGAG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 226, 254
Bst4CI ACNGT 2 cut(s) 143, 250
Bst6I CTCTTC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 98, 104
BstHHI GCGC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 226, 254
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 224, 252
BstSLI GKGCMC 3 cut(s) 41, 260, 277
BstV1I GCAGC 3 cut(s) 44, 47, 134
BsuRI GGCC 4 cut(s) 219, 223, 229, 258
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 98, 104
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 147
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 5 cut(s) 217, 222, 228, 256, 257
Csp6I GTAC 3 cut(s) 28, 160, 210
CviAII CATG 3 cut(s) 16, 54, 155
CviJI RGCY 5 cut(s) 7, 219, 223, 229, 258
CviKI_1 RGCY 5 cut(s) 7, 219, 223, 229, 258
CviQI GTAC 3 cut(s) 28, 160, 210
DdeI CTNAG 1 cut(s) 213
DraIII CACNNNGTG 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 256, 257
EcoRII CCWGG 2 cut(s) 224, 252
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 3 cut(s) 19, 57, 158
FaiI YATR 5 cut(s) 17, 55, 69, 75, 156
FatI CATG 3 cut(s) 15, 53, 154
Fnu4HI GCNGC 3 cut(s) 58, 61, 148
FokI GGATG 2 cut(s) 105, 111
FriOI GRGCYC 1 cut(s) 260
FseI GGCCGGCC 1 cut(s) 223
Fsp4HI GCNGC 3 cut(s) 58, 61, 148
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 64
GluI GCNGC 3 cut(s) 58, 61, 148
HaeIII GGCC 4 cut(s) 219, 223, 229, 258
HapII CCGG 2 cut(s) 183, 220
HhaI GCGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 19, 57, 158
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 2 cut(s) 113, 205
HpaII CCGG 2 cut(s) 183, 220
Hpy188III TCNNGA 2 cut(s) 110, 155
HpyCH4III ACNGT 2 cut(s) 143, 250
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 3 cut(s) 19, 57, 158
HspAI GCGC 1 cut(s) 63
KroI GCCGGC 1 cut(s) 219
KroNI GCCGGC 1 cut(s) 221
Lsp1109I GCAGC 3 cut(s) 44, 47, 134
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 77
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 41, 260, 277
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 3 cut(s) 117, 162, 264
MroNI GCCGGC 1 cut(s) 219
MspI CCGG 2 cut(s) 183, 220
MspR9I CCNGG 2 cut(s) 226, 254
MvaI CCWGG 2 cut(s) 226, 254
MwoI GCNNNNNNNGC 1 cut(s) 242
NaeI GCCGGC 1 cut(s) 221
NgoMIV GCCGGC 1 cut(s) 219
NlaIII CATG 3 cut(s) 19, 57, 158
NlaIV GGNNCC 3 cut(s) 258, 259, 276
NspI RCATGY 1 cut(s) 57
PagI TCATGA 1 cut(s) 154
PdiI GCCGGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 59, 62, 149
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 224, 252
PspGI CCWGG 2 cut(s) 224, 252
PspN4I GGNNCC 3 cut(s) 258, 259, 276
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 5 cut(s) 217, 222, 228, 256, 257
PstNI CAGNNNCTG 1 cut(s) 147
RigI GGCCGGCC 1 cut(s) 223
RsaI GTAC 3 cut(s) 29, 161, 211
RsaNI GTAC 3 cut(s) 28, 160, 210
SatI GCNGC 3 cut(s) 58, 61, 148
Sau96I GGNCC 5 cut(s) 217, 222, 228, 256, 257
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 226, 254
SduI GDGCHC 3 cut(s) 41, 260, 277
SetI ASST 2 cut(s) 125, 177
SfaNI GCATC 1 cut(s) 169
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 224, 252
TaaI ACNGT 2 cut(s) 143, 250
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 1 cut(s) 205
TscAI CASTG 1 cut(s) 238
TseI GCWGC 3 cut(s) 57, 60, 147
TspDTI ATGAA 3 cut(s) 17, 218, 281
TspRI CASTG 1 cut(s) 238
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 1 cut(s) 57
XspI CTAG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.