Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0024419

Physical Location & Seq

Genomic Coordinates Forward (+)

65903025 .. 65903518

Gene Structure 494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG492400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGCGTAATCTGGGTAACACCGCAACCGGGAAATGTGGAATTGCAATGGAGGCTTCTTACCCCGTCAAGGTAGGACAGAATCCCCCTAACCCTGGTCCATCTCCTCCATCTCCGATAAAACCTCCTCAGGTTTGTGACAACTACTTCTCCTGCCCCGAGAGCAACACCTGCTGCTGTATCTATCAGTATGCAAACTACTGCTTTGCTTGGGGATGCTGTCCTCTTGAAGGTGCCACCTGCTGTGATGACCATTACAGTTGCTGCCCATCAGACTACCCCGTCTGCAATGTCAATGCAGGAACCTGTCAGCTGAGCAAGGGCAATCCAATGAGTGTGAAGGCATTGAAGCGCACACCCGCTAAAGCTCACTGGACTTTGGGAGGTGGTGCCAAGCACAGCAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010494 GO:0016787 GO:0019538 GO:0030054 GO:0030163 GO:0032991 GO:0035770 GO:0036464 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

136

Amino Acids

14.42

Weight (kDa)

7.87

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Granulin	PF00396	57 - 104	5.5e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024419)

Species	Orthologous Gene IDs
malus_domestica	MD12G1087100.v1.1
pyrus_communis	pycom05g08630
rosa_samantha	Rh6CG492400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	179, 248
AasI	GACNNNNNNGTC	1 cut(s)	281
Acc36I	ACCTGC	2 cut(s)	179, 248
AccB1I	GGYRCC	2 cut(s)	233, 389
AciI	CCGC	2 cut(s)	24, 360
AfiI	CCNNNNNNNGG	4 cut(s)	30, 70, 95, 230
AgsI	TTSAA	2 cut(s)	230, 349
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	313, 368
AluI	AGCT	2 cut(s)	313, 368
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	174, 264
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	98
AxyI	CCTNAGG	1 cut(s)	129
BanI	GGYRCC	2 cut(s)	233, 389
BbvI	GCAGC	2 cut(s)	161, 251
BccI	CCATC	3 cut(s)	109, 118, 277
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	31
BfuAI	ACCTGC	2 cut(s)	179, 248
BisI	GCNGC	2 cut(s)	175, 265
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	2 cut(s)	176, 266
Bme1390I	CCNGG	2 cut(s)	31, 96
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	235, 304, 391
BmrFI	CCNGG	2 cut(s)	31, 96
BmsI	GCATC	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 70, 95, 230
Bse1I	ACTGG	1 cut(s)	377
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	2 cut(s)	54, 295
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	4 cut(s)	30, 70, 95, 230
BseMI	GCAATG	2 cut(s)	54, 295
BseMII	CTCAG	2 cut(s)	143, 305
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	96, 117
BseXI	GCAGC	2 cut(s)	161, 251
BshNI	GGYRCC	2 cut(s)	233, 389
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	4 cut(s)	30, 70, 95, 230
BsoBI	CYCGRG	1 cut(s)	158
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	2 cut(s)	24, 360
BspCNI	CTCAG	2 cut(s)	142, 306
BspLI	GGNNCC	3 cut(s)	235, 304, 391
BspMI	ACCTGC	2 cut(s)	179, 248
BspT107I	GGYRCC	2 cut(s)	233, 389
BsrDI	GCAATG	2 cut(s)	54, 295
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	129, 314
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 162, 171
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	29, 94
BstV1I	GCAGC	2 cut(s)	161, 251
Bsu36I	CCTNAGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	370
BveI	ACCTGC	2 cut(s)	179, 248
CaiI	CAGNNNCTG	1 cut(s)	264
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	98
CviJI	RGCY	3 cut(s)	56, 313, 368
CviKI_1	RGCY	3 cut(s)	56, 313, 368
DdeI	CTNAG	2 cut(s)	129, 314
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	94
FaiI	YATR	1 cut(s)	192
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	175, 265
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	175, 265
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	175, 265
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	354
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	30
Hpy188I	TCNGA	2 cut(s)	117, 274
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	224, 334
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	47, 194, 288, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 162, 171
HpyF3I	CTNAG	2 cut(s)	129, 314
HspAI	GCGC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	161, 251
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	17, 137
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	6 cut(s)	46, 117, 135, 138, 234, 377
MseI	TTAA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	31, 96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	53, 162, 171
NciI	CCSGG	1 cut(s)	31
NlaIV	GGNNCC	3 cut(s)	235, 304, 391
NmuCI	GTSAC	1 cut(s)	137
PaqCI	CACCTGC	2 cut(s)	179, 248
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	176, 266
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	235, 304, 391
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	2 cut(s)	175, 265
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	31, 96
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	24, 360
StyD4I	CCNGG	2 cut(s)	29, 94
TaaI	ACNGT	1 cut(s)	260
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	174, 264
Tsp45I	GTSAC	1 cut(s)	137
TspRI	CASTG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.