Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0028716

Physical Location & Seq

Genomic Coordinates Reverse (-)

17510534 .. 17511821

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1110700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAATCAATCTTTGAACTTTTCATCTTCTGGCTCAACTGAGGTTCCAATGGTGGGCATTCCTAAAGAAGTGGGTAGAGGAGGATGGGGTATTTTATCTGGATCTGGTGCCTACAATGCCTCAAGTGATGCTACCCTTTTTTCAAGCTCACTACCTGTTCTTCCACATCCGAAGTATAAACTCCACCAAACTTTGGAGGGTAATGATCTGCTTGAAGAAATTGAAACTCATGCAATCGGAAGCTTGCTTCCTGGCGATGAGGAGGAGCTATTAGCTGGCATAGCGGATGATCTTGACCTCAGTGGGTTGCCTGGTTCACTGGAAGACTTGGAAGATTATGATCTATTTGGTAGTGGAGGCGGCATGGAATTGGAAACTGATGCACAGGAGAGCCTGAGAATAGGCATGTCAAAAGTAAGTTTAGCTGACAGTTCTACTGGGAATGGGATGGCTCAATTTGCCCTTCCAAATGGTGTGGGAGCTGTTGCTGGAGAGCATCCATATGGAGAGCATCCTTCCAGAACATTGTTTGTGCGAAATATCAATAGTAATGTTGAGGATTCAGAACTGAGAACACTTTTTGAGGTTTTACCTATCGTACATTTGTACAAGTTTTGCCTCTTACTCATACGGCATTGTGTATTTGAATCCCAGAACAGTTGTTTAAATAATAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

227

Amino Acids

24.16

Weight (kDa)

4.47

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028716)

Species	Orthologous Gene IDs
malus_domestica	MD12G1110700.v1.1
prunus_persica	Prupe.3G009200_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	193
AciI	CCGC	2 cut(s)	284, 360
AclWI	GGATC	1 cut(s)	109
AfaI	GTAC	2 cut(s)	600, 608
AfiI	CCNNNNNNNGG	2 cut(s)	53, 193
AgsI	TTSAA	5 cut(s)	16, 144, 215, 224, 647
AjnI	CCWGG	2 cut(s)	250, 310
AluBI	AGCT	6 cut(s)	147, 243, 268, 275, 425, 482
AluI	AGCT	6 cut(s)	147, 243, 268, 275, 425, 482
AlwI	GGATC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	330
BccI	CCATC	2 cut(s)	78, 442
BceAI	ACGGC	1 cut(s)	647
BciT130I	CCWGG	2 cut(s)	252, 312
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	252, 312
BmiI	GGNNCC	2 cut(s)	45, 109
BmrFI	CCNGG	2 cut(s)	252, 312
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	4 cut(s)	118, 370, 505, 520
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 193
Bse1I	ACTGG	2 cut(s)	324, 442
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	252, 312
BseGI	GGATG	6 cut(s)	89, 166, 292, 453, 496, 511
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	53, 193
BseMII	CTCAG	4 cut(s)	30, 313, 386, 560
BseNI	ACTGG	2 cut(s)	324, 442
BseRI	GAGGAG	3 cut(s)	93, 275, 278
BshNI	GGYRCC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	53, 193
BsmI	GAATGC	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	101, 205, 289, 340
BspACI	CCGC	2 cut(s)	284, 360
BspCNI	CTCAG	4 cut(s)	31, 312, 387, 561
BspLI	GGNNCC	2 cut(s)	45, 109
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	324, 442
BssMI	GATC	4 cut(s)	101, 205, 289, 340
Bst2UI	CCWGG	2 cut(s)	252, 312
Bst4CI	ACNGT	2 cut(s)	431, 659
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	245, 277
BstDEI	CTNAG	4 cut(s)	39, 299, 395, 569
BstF5I	GGATG	6 cut(s)	89, 166, 292, 453, 496, 511
BstKTI	GATC	4 cut(s)	104, 208, 292, 343
BstMBI	GATC	4 cut(s)	101, 205, 289, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 281, 458
BstNI	CCWGG	2 cut(s)	252, 312
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	250, 310
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	6 cut(s)	89, 166, 292, 453, 496, 511
BtsIMutI	CAGTG	2 cut(s)	307, 317
Cac8I	GCNNGC	2 cut(s)	245, 277
Csp6I	GTAC	2 cut(s)	599, 607
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	3 cut(s)	230, 364, 406
CviJI	RGCY	9 cut(s)	33, 147, 243, 268, 275, 393, 425, 452, 482
CviKI_1	RGCY	9 cut(s)	33, 147, 243, 268, 275, 393, 425, 452, 482
CviQI	GTAC	2 cut(s)	599, 607
DdeI	CTNAG	4 cut(s)	39, 299, 395, 569
DpnI	GATC	4 cut(s)	103, 207, 291, 342
DpnII	GATC	4 cut(s)	101, 205, 289, 340
DraI	TTTAAA	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	250, 310
FaeI	CATG	3 cut(s)	233, 367, 409
FaiI	YATR	9 cut(s)	177, 231, 281, 339, 365, 407, 502, 504, 629
FatI	CATG	3 cut(s)	229, 363, 405
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	6 cut(s)	96, 153, 299, 460, 483, 498
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	510
Hin1II	CATG	3 cut(s)	233, 367, 409
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	3 cut(s)	4, 560, 647
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	4 cut(s)	171, 239, 565, 680
Hpy188III	TCNNGA	3 cut(s)	99, 293, 519
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	473, 525
HpyCH4III	ACNGT	2 cut(s)	431, 659
HpyCH4V	TGCA	2 cut(s)	233, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 281, 458
HpyF3I	CTNAG	4 cut(s)	39, 299, 395, 569
Hsp92II	CATG	3 cut(s)	233, 367, 409
Kzo9I	GATC	4 cut(s)	101, 205, 289, 340
LmnI	GCTCC	2 cut(s)	265, 479
LweI	GCATC	4 cut(s)	118, 370, 505, 520
MalI	GATC	4 cut(s)	103, 207, 291, 342
MboI	GATC	4 cut(s)	101, 205, 289, 340
MboII	GAAGA	5 cut(s)	18, 152, 227, 335, 344
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	3 cut(s)	219, 368, 455
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	252, 312
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	2 cut(s)	252, 312
MwoI	GCNNNNNNNGC	3 cut(s)	116, 281, 458
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	4 cut(s)	101, 205, 289, 340
NlaIII	CATG	3 cut(s)	233, 367, 409
NlaIV	GGNNCC	2 cut(s)	45, 109
NspI	RCATGY	1 cut(s)	409
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	4, 560, 647
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	250, 310
PspGI	CCWGG	2 cut(s)	250, 310
PspN4I	GGNNCC	2 cut(s)	45, 109
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	600, 608
RsaNI	GTAC	2 cut(s)	599, 607
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	4 cut(s)	101, 205, 289, 340
ScrFI	CCNGG	2 cut(s)	252, 312
SfaNI	GCATC	4 cut(s)	118, 370, 505, 520
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	219, 368, 455
SsiI	CCGC	2 cut(s)	284, 360
StyD4I	CCNGG	2 cut(s)	250, 310
TaaI	ACNGT	2 cut(s)	431, 659
TasI	AATT	3 cut(s)	219, 368, 455
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	4, 560, 647
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	2 cut(s)	307, 324
TspDTI	ATGAA	2 cut(s)	12, 17
TspRI	CASTG	2 cut(s)	307, 324
Van91I	CCANNNNNTGG	1 cut(s)	193
XceI	RCATGY	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.