Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0028716

Physical Location & Seq

Genomic Coordinates Forward (+)

576975 .. 579264

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTTCAGCACTTTCCTTGGGTCATTGGCCACAAAGGGTTGAAGCGTGGGAGCCCACCGTGGATGGCTCTTCAGGACAGGGATGCAATGAATCACTCTTTCAACTTTTCATCTTCTGGCCCAACCGAGATTCCAATGGTGGGTATCCCCAAAGAAGTGGGTAGAGGAGGTTGGGGAATTTTATCTGGATCTGGTGTCCATCACGCCTCAAGTGATGCTACCCTCTTTTCAAGCTCGTTACCTGTTCTTCCACATCCAAAGTTGAACACAGAACATGGCTGTCAATCTATTGATGATCTCTCAACTGGCTTAAATAAGCTGGGCCATAATTTGGAGGGCAATGATACACTTGAAGATATTGAAACTCATGCAATTGGAAGCTTGCTTCCTGGTGACGAGGAGGAGCTATTAGCTGGCATAGCAGATGATCTTGACCTCAGTGGGTTGCCTGGTTCCCTGGAAGACTTGGAAGAGTATGATCTCTTTGGTAGTGGAGGTGGCATGGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

171

Amino Acids

18.05

Weight (kDa)

4.52

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028716)

Species	Orthologous Gene IDs
malus_domestica	MD12G1110700.v1.1
prunus_persica	Prupe.3G009200_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	140, 331
AgsI	TTSAA	6 cut(s)	43, 103, 231, 265, 353, 362
AjnI	CCWGG	3 cut(s)	388, 448, 456
AluBI	AGCT	5 cut(s)	234, 319, 381, 406, 413
AluI	AGCT	5 cut(s)	234, 319, 381, 406, 413
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	3 cut(s)	28, 118, 322
ApoI	RAATTY	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	119, 322
AsuHPI	GGTGA	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	468
BccI	CCATC	2 cut(s)	58, 207
BciT130I	CCWGG	3 cut(s)	390, 450, 458
BciVI	GTATCC	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	155
Bme1390I	CCNGG	3 cut(s)	390, 450, 458
BmgT120I	GGNCC	2 cut(s)	119, 322
BmiI	GGNNCC	2 cut(s)	53, 454
BmrFI	CCNGG	3 cut(s)	390, 450, 458
BmsI	GCATC	2 cut(s)	73, 205
BpiI	GAAGAC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	17, 59, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 331
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	2 cut(s)	93, 346
BseBI	CCWGG	3 cut(s)	390, 450, 458
BseDI	CCNNGG	3 cut(s)	17, 59, 456
BseGI	GGATG	3 cut(s)	69, 88, 253
BseLI	CCNNNNNNNGG	2 cut(s)	140, 331
BseMI	GCAATG	2 cut(s)	93, 346
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	3 cut(s)	180, 413, 416
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	3 cut(s)	30, 120, 324
BslI	CCNNNNNNNGG	2 cut(s)	140, 331
BsnI	GGCC	3 cut(s)	30, 120, 324
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	188, 295, 427, 478
BspANI	GGCC	3 cut(s)	30, 120, 324
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	53, 454
BspPI	GGATC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	93, 346
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	17, 59, 456
BssMI	GATC	4 cut(s)	188, 295, 427, 478
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	390, 450, 458
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	75, 465
BstC8I	GCNNGC	2 cut(s)	383, 415
BstDEI	CTNAG	1 cut(s)	437
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	69, 88, 253
BstKTI	GATC	4 cut(s)	191, 298, 430, 481
BstMBI	GATC	4 cut(s)	188, 295, 427, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	3 cut(s)	390, 450, 458
BstSCI	CCNGG	3 cut(s)	388, 448, 456
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	30, 120, 324
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	69, 88, 253
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	383, 415
Cfr13I	GGNCC	2 cut(s)	119, 322
CviAII	CATG	3 cut(s)	275, 368, 502
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	190, 297, 429, 480
DpnII	GATC	4 cut(s)	188, 295, 427, 478
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	75, 465
EarI	CTCTTC	2 cut(s)	75, 465
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	388, 448, 456
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	3 cut(s)	278, 371, 505
FaiI	YATR	6 cut(s)	276, 327, 369, 419, 477, 503
FatI	CATG	3 cut(s)	274, 367, 501
FokI	GGATG	3 cut(s)	76, 95, 240
FriOI	GRGCYC	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	30, 120, 324
Hin1II	CATG	3 cut(s)	278, 371, 505
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	2 cut(s)	91, 130
HphI	GGTGA	1 cut(s)	404
Hpy188III	TCNNGA	3 cut(s)	74, 186, 431
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	86, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	437
Hsp92II	CATG	3 cut(s)	278, 371, 505
Kzo9I	GATC	4 cut(s)	188, 295, 427, 478
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	51, 403
LweI	GCATC	2 cut(s)	73, 205
MaeIII	GTNAC	2 cut(s)	237, 392
MalI	GATC	4 cut(s)	190, 297, 429, 480
MboI	GATC	4 cut(s)	188, 295, 427, 478
MboII	GAAGA	6 cut(s)	62, 105, 239, 365, 473, 482
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	4 cut(s)	177, 328, 372, 506
MluNI	TGGCCA	1 cut(s)	30
MnlI	CCTC	9 cut(s)	158, 161, 217, 233, 328, 391, 394, 446, 488
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	30
MspR9I	CCNGG	3 cut(s)	390, 450, 458
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	390, 450, 458
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	4 cut(s)	188, 295, 427, 478
NlaIII	CATG	3 cut(s)	278, 371, 505
NlaIV	GGNNCC	2 cut(s)	53, 454
NmuCI	GTSAC	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	91, 130
PflMI	CCANNNNNTGG	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	388, 448, 456
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	3 cut(s)	388, 448, 456
PspN4I	GGNNCC	2 cut(s)	53, 454
PspPI	GGNCC	2 cut(s)	119, 322
PsuI	RGATCY	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	188, 295, 427, 478
Sau96I	GGNCC	2 cut(s)	119, 322
ScrFI	CCNGG	3 cut(s)	390, 450, 458
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	172, 236, 244, 321, 383, 408, 415, 438, 499
SfaNI	GCATC	2 cut(s)	73, 205
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	4 cut(s)	177, 328, 372, 506
StyD4I	CCNGG	3 cut(s)	388, 448, 456
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	60
TasI	AATT	4 cut(s)	177, 328, 372, 506
TfiI	GAWTC	2 cut(s)	91, 130
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	99, 104
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.