MD12G1192600.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
27457756 .. 27458800
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1192600.v1.1.491

Sequence Viewer

Length: 174 bp
ATGCTGCAATTCTCACAAGATTGGAATGGGTACAATCTGAGCACTCCTAAAACTGAAAATTTCTCCAAAGATTGTGAGAATGGATGTGTCAGATATGGTTTATCGTCCATGCAAGGATGGCGTACCACAATGGAGGATGCTGTGAGTGCATTAAACTTTTCTCTTCCTATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

58

Amino Acids

6.47

Weight (kDa)

4.59

Isoelectric Point (pI)

21.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024426)

Species Orthologous Gene IDs
malus_domestica MD12G1192600.v1.1
pyrus_communis pycom09g09850 pycom11g22040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 2 cut(s) 32, 124
Alw21I GWGCWC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 1 cut(s) 111
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmsI GCATC 1 cut(s) 127
BseGI GGATG 3 cut(s) 89, 122, 142
BseMII CTCAG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 89, 122, 142
BstMWI GCNNNNNNNGC 2 cut(s) 118, 146
BtsCI GGATG 3 cut(s) 89, 122, 142
Csp6I GTAC 2 cut(s) 31, 123
CviAII CATG 1 cut(s) 109
CviQI GTAC 2 cut(s) 31, 123
DdeI CTNAG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 96, 110
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 3 cut(s) 96, 129, 149
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
Hin1II CATG 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 39, 92
HpyCH4V TGCA 3 cut(s) 7, 112, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 146
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 1 cut(s) 112
LweI GCATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 8, 58
MnlI CCTC 1 cut(s) 127
MseI TTAA 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 118, 146
NlaIII CATG 1 cut(s) 112
PkrI GCNGC 1 cut(s) 6
RsaI GTAC 2 cut(s) 32, 124
RsaNI GTAC 2 cut(s) 31, 123
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 5
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 1 cut(s) 127
SgeI CNNG 3 cut(s) 29, 121, 125
Sse9I AATT 2 cut(s) 8, 58
TasI AATT 2 cut(s) 8, 58
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseI GCWGC 1 cut(s) 4
XapI RAATTY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.