Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0024426

Physical Location & Seq

Genomic Coordinates Forward (+)

25023615 .. 25024440

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g22040.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTAGAAATTAGCTGTCTGCTTGAGGAGTTCCTGTTGGTGGCAATGAGCGACATAGACCCGGTCTCCAGCGTGCGGGACGGGACACTACAAAATCTACGTCGGTTGGAAAATCAATGTGCGGTCTTGGTGGTTTGCCAATTTTCTCAGTTTGGCAGTTTGCAATGCGATGTTAACTTTTATGCTCGTTTGGTCCTAAAACAACTTTCTTGTCTTGTGTTCACGACCAACTCTTTAAACTTTTGGTTGCTCCTATATGAACACGGATCCCCTCCGGATCCATTATGTGGGGATCCTATGAATTGGGACCTGACAATCCACCATATGCTGCCAAGTTCTATGACTTTTGTGGGGATGAGGATCCTGAGGCATCCAGCTGCACTACCAGTTTCCGTGTTTCGTATAATGACGATTGATCCATGTAATATCTCTGTTTTAAGTTTCATCATTTCATGCAGCGTAATTGGTTTTTTTATTCTTTTCTTAACGTCTGTTTATTTTCATTATTGTATTAATGTTTTCTGCTGTTGTTTATATAATTCTAAGAGGAGACAGATTAATGGCATGAGGGTAAAAAAAAATAAAAAAGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.63

Weight (kDa)

7.98

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024426)

Species	Orthologous Gene IDs
malus_domestica	MD12G1192600.v1.1
pyrus_communis	pycom09g09850 pycom11g22040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	287
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	2 cut(s)	76, 122
AclWI	GGATC	9 cut(s)	261, 272, 274, 285, 287, 300, 355, 368, 410
AfiI	CCNNNNNNNGG	3 cut(s)	40, 75, 287
AluBI	AGCT	2 cut(s)	15, 377
AluI	AGCT	2 cut(s)	15, 377
Alw26I	GTCTC	2 cut(s)	70, 544
AlwI	GGATC	9 cut(s)	261, 272, 274, 285, 287, 300, 355, 368, 410
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	328, 377, 456
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AseI	ATTAAT	2 cut(s)	513, 558
AspS9I	GGNCC	2 cut(s)	193, 307
AsuC2I	CCSGG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	193, 307
AxyI	CCTNAGG	1 cut(s)	365
BamHI	GGATCC	4 cut(s)	266, 277, 292, 360
BbvI	GCAGC	3 cut(s)	315, 364, 468
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	70, 544
BisI	GCNGC	3 cut(s)	329, 378, 457
BlsI	GCNGC	3 cut(s)	330, 379, 458
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	2 cut(s)	193, 307
BmgT120I	GGNCC	2 cut(s)	193, 307
BmiI	GGNNCC	5 cut(s)	268, 279, 294, 308, 362
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 75, 287
Bse1I	ACTGG	1 cut(s)	386
Bse21I	CCTNAGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	51, 170
Bse8I	GATNNNNATC	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	274
BseGI	GGATG	2 cut(s)	360, 370
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	3 cut(s)	40, 75, 287
BseMI	GCAATG	2 cut(s)	51, 170
BseMII	CTCAG	2 cut(s)	161, 356
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	2 cut(s)	41, 562
BseXI	GCAGC	3 cut(s)	315, 364, 468
BsgI	GTGCAG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	62, 275
BslFI	GGGAC	3 cut(s)	92, 97, 320
BslI	CCNNNNNNNGG	3 cut(s)	40, 75, 287
BsmAI	GTCTC	2 cut(s)	70, 544
BsmFI	GGGAC	3 cut(s)	92, 97, 320
Bso31I	GGTCTC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	266, 277, 292, 360, 415
BspACI	CCGC	2 cut(s)	76, 122
BspCNI	CTCAG	2 cut(s)	160, 357
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	5 cut(s)	268, 279, 294, 308, 362
BspPI	GGATC	9 cut(s)	261, 272, 274, 285, 287, 300, 355, 368, 410
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	51, 170
BsrI	ACTGG	1 cut(s)	386
BssMI	GATC	5 cut(s)	266, 277, 292, 360, 415
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	147, 365, 543
BstF5I	GGATG	2 cut(s)	360, 370
BstKTI	GATC	5 cut(s)	269, 280, 295, 363, 418
BstMAI	GTCTC	2 cut(s)	70, 544
BstMBI	GATC	5 cut(s)	266, 277, 292, 360, 415
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	315, 364, 468
BstX2I	RGATCY	4 cut(s)	266, 277, 292, 360
BstYI	RGATCY	4 cut(s)	266, 277, 292, 360
Bsu36I	CCTNAGG	1 cut(s)	365
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	360, 370
Cac8I	GCNNGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	193, 307
CviAII	CATG	3 cut(s)	420, 453, 565
CviJI	RGCY	2 cut(s)	15, 377
CviKI_1	RGCY	2 cut(s)	15, 377
DdeI	CTNAG	3 cut(s)	147, 365, 543
DpnI	GATC	5 cut(s)	268, 279, 294, 362, 417
DpnII	GATC	5 cut(s)	266, 277, 292, 360, 415
DraI	TTTAAA	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	193, 307
Eco81I	CCTNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	307
FaeI	CATG	3 cut(s)	423, 456, 568
FaqI	GGGAC	3 cut(s)	92, 97, 320
FatI	CATG	3 cut(s)	419, 452, 564
FauI	CCCGC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	329, 378, 457
FokI	GGATG	2 cut(s)	357, 367
Fsp4HI	GCNGC	3 cut(s)	329, 378, 457
GluI	GCNGC	3 cut(s)	329, 378, 457
GsuI	CTGGAG	1 cut(s)	52
HapII	CCGG	2 cut(s)	62, 275
Hin1II	CATG	3 cut(s)	423, 456, 568
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	62, 275
Hpy166II	GTNNAC	2 cut(s)	175, 222
Hpy188III	TCNNGA	3 cut(s)	223, 275, 364
Hpy8I	GTNNAC	2 cut(s)	175, 222
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4IV	ACGT	2 cut(s)	100, 488
HpyCH4V	TGCA	3 cut(s)	163, 380, 456
HpyF3I	CTNAG	3 cut(s)	147, 365, 543
HpySE526I	ACGT	2 cut(s)	100, 488
Hsp92II	CATG	3 cut(s)	423, 456, 568
Kpn2I	TCCGGA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	266, 277, 292, 360, 415
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	8 cut(s)	47, 75, 82, 288, 323, 377, 387, 399
Lsp1109I	GCAGC	3 cut(s)	315, 364, 468
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	2 cut(s)	100, 488
MalI	GATC	5 cut(s)	268, 279, 294, 362, 417
MboI	GATC	5 cut(s)	266, 277, 292, 360, 415
MflI	RGATCY	4 cut(s)	266, 277, 292, 360
MluCI	AATT	5 cut(s)	9, 140, 301, 462, 538
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	19, 282, 351, 360, 540, 561
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	6 cut(s)	174, 236, 437, 485, 513, 558
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	62, 275
MspR9I	CCNGG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	5 cut(s)	266, 277, 292, 360, 415
NlaIII	CATG	3 cut(s)	423, 456, 568
NlaIV	GGNNCC	5 cut(s)	268, 279, 294, 308, 362
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	330, 379, 458
PpuMI	RGGWCCY	1 cut(s)	307
PshBI	ATTAAT	2 cut(s)	513, 558
Psp5II	RGGWCCY	1 cut(s)	307
PspN4I	GGNNCC	5 cut(s)	268, 279, 294, 308, 362
PspPI	GGNCC	2 cut(s)	193, 307
PspPPI	RGGWCCY	1 cut(s)	307
PsuI	RGATCY	4 cut(s)	266, 277, 292, 360
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	377
SaqAI	TTAA	6 cut(s)	174, 236, 437, 485, 513, 558
SatI	GCNGC	3 cut(s)	329, 378, 457
Sau3AI	GATC	5 cut(s)	266, 277, 292, 360, 415
Sau96I	GGNCC	2 cut(s)	193, 307
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	5 cut(s)	17, 103, 312, 379, 491
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	2 cut(s)	193, 307
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	9, 140, 301, 462, 538
SsiI	CCGC	2 cut(s)	76, 122
StyD4I	CCNGG	1 cut(s)	60
TaiI	ACGT	2 cut(s)	103, 491
TasI	AATT	5 cut(s)	9, 140, 301, 462, 538
Tru1I	TTAA	6 cut(s)	174, 236, 437, 485, 513, 558
Tru9I	TTAA	6 cut(s)	174, 236, 437, 485, 513, 558
TseI	GCWGC	3 cut(s)	328, 377, 456
TspDTI	ATGAA	5 cut(s)	273, 314, 433, 441, 491
TspGWI	ACGGA	2 cut(s)	279, 382
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	193, 307
VspI	ATTAAT	2 cut(s)	513, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.