Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0022309

Physical Location & Seq

Genomic Coordinates Reverse (-)

258221 .. 260974

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1004300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGCAGGATACATTGCGGAGAATACCTGCAGGTAGTGGAGGAGGTTACGATCCGTGTACAATGACCTATGCAACAACATACTTCAATCGTCCAGATGTTCAAGAAACATTGCATGCAAACGTAACCAAAGTACCTGCTAATGTAAGCAATGCATGGACGGACTGGGCCTTTTCAATTCTTCCAATTATCCAAAAACTCGTTGATGGAGATCTTCGTGTATGGATCTACAGTGGAGATGCAGATGGTAGGGTTCCGGTGACCTCAACAAGGTATGCATTGAACAAACTTGGCCTAAACATTACCGAGGACTGGACCCCACGATACGAGGGGTTGACTTTCTTAACGAGAGGCGCAGGCCATTTTCCCACATTTGCTCCCAGGCGTTCTCTCCGGATCATCAGACACTTTTTGGCAAACCATAGGCTGCCATCTGTCGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

149

Amino Acids

16.68

Weight (kDa)

9.25

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	13 - 140	2e-21	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022309)

Species	Orthologous Gene IDs
malus_domestica	MD13G1004300.v1.1
pyrus_communis	pycom13g00370
rosa_chinensis	RchiOBHm_Chr1g0330091
rosa_roxburghii	Rroxscaffold_4G00320390

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	23, 37, 145
AccIII	TCCGGA	1 cut(s)	393
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	3 cut(s)	47, 233, 404
AfaI	GTAC	2 cut(s)	61, 135
AfiI	CCNNNNNNNGG	2 cut(s)	270, 312
AgsI	TTSAA	4 cut(s)	88, 104, 177, 283
AjnI	CCWGG	1 cut(s)	380
AlwI	GGATC	3 cut(s)	47, 233, 404
Aor13HI	TCCGGA	1 cut(s)	393
AoxI	GGCC	3 cut(s)	168, 292, 358
ApeKI	GCWGC	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	168, 315
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	315
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	200, 239, 439
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	4
BfmI	CTRYAG	2 cut(s)	30, 229
BfuAI	ACCTGC	3 cut(s)	23, 37, 145
BfuI	GTATCC	1 cut(s)	4
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	168, 315
BmiI	GGNNCC	2 cut(s)	255, 317
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	306, 380
BsaWI	WCCGGW	2 cut(s)	256, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 312
Bse1I	ACTGG	2 cut(s)	170, 317
Bse3DI	GCAATG	3 cut(s)	14, 110, 157
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	306, 380
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	270, 312
BseMI	GCAATG	3 cut(s)	14, 110, 157
BseNI	ACTGG	2 cut(s)	170, 317
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	414
BshFI	GGCC	3 cut(s)	170, 294, 360
BsiSI	CCGG	2 cut(s)	257, 394
BslI	CCNNNNNNNGG	2 cut(s)	270, 312
BsnI	GGCC	3 cut(s)	170, 294, 360
Bsp13I	TCCGGA	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	52, 211, 225, 396
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	170, 294, 360
BspEI	TCCGGA	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	255, 317
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	3 cut(s)	23, 37, 145
BspPI	GGATC	3 cut(s)	47, 233, 404
BsrDI	GCAATG	3 cut(s)	14, 110, 157
BsrGI	TGTACA	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	170, 317
BssECI	CCNNGG	2 cut(s)	306, 380
BssMI	GATC	4 cut(s)	52, 211, 225, 396
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	117, 358
BstEII	GGTNACC	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	4 cut(s)	55, 214, 228, 399
BstMBI	GATC	4 cut(s)	52, 211, 225, 396
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	2 cut(s)	30, 229
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	211, 225
BstYI	RGATCY	2 cut(s)	211, 225
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	170, 294, 360
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	3 cut(s)	23, 37, 145
Cac8I	GCNNGC	2 cut(s)	117, 358
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	168, 315
Csp6I	GTAC	2 cut(s)	60, 134
CviAII	CATG	2 cut(s)	116, 156
CviJI	RGCY	4 cut(s)	170, 294, 360, 427
CviKI_1	RGCY	4 cut(s)	170, 294, 360, 427
CviQI	GTAC	2 cut(s)	60, 134
DpnI	GATC	4 cut(s)	54, 213, 227, 398
DpnII	GATC	4 cut(s)	52, 211, 225, 396
Eco47I	GGWCC	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	380
EcoT22I	ATGCAT	2 cut(s)	157, 280
FaeI	CATG	2 cut(s)	119, 159
FaiI	YATR	7 cut(s)	72, 82, 117, 157, 223, 276, 423
FatI	CATG	2 cut(s)	115, 155
Fnu4HI	GCNGC	1 cut(s)	428
Fsp4HI	GCNGC	1 cut(s)	428
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	3 cut(s)	170, 294, 360
HapII	CCGG	2 cut(s)	257, 394
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	119, 159
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HpaII	CCGG	2 cut(s)	257, 394
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	60, 336
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	3 cut(s)	95, 104, 394
Hpy8I	GTNNAC	2 cut(s)	60, 336
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	32, 74, 115, 119, 155, 242, 278
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	119, 159
HspAI	GCGC	1 cut(s)	354
Kpn2I	TCCGGA	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	52, 211, 225, 396
LmnI	GCTCC	2 cut(s)	4, 382
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	1 cut(s)	229
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	47, 124, 259
MalI	GATC	4 cut(s)	54, 213, 227, 398
MboI	GATC	4 cut(s)	52, 211, 225, 396
MboII	GAAGA	2 cut(s)	173, 206
MflI	RGATCY	2 cut(s)	211, 225
MluCI	AATT	2 cut(s)	177, 186
MnlI	CCTC	6 cut(s)	35, 38, 274, 301, 322, 344
Mph1103I	ATGCAT	2 cut(s)	157, 280
MroI	TCCGGA	1 cut(s)	393
MseI	TTAA	1 cut(s)	344
MspI	CCGG	2 cut(s)	257, 394
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
NdeII	GATC	4 cut(s)	52, 211, 225, 396
NlaIII	CATG	2 cut(s)	119, 159
NlaIV	GGNNCC	2 cut(s)	255, 317
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	2 cut(s)	157, 280
NspI	RCATGY	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	380
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	255, 317
PspPI	GGNCC	2 cut(s)	168, 315
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	211, 225
RsaI	GTAC	2 cut(s)	61, 135
RsaNI	GTAC	2 cut(s)	60, 134
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	4 cut(s)	52, 211, 225, 396
Sau96I	GGNCC	2 cut(s)	168, 315
SbfI	CCTGCAGG	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	382
SdaI	CCTGCAGG	1 cut(s)	34
SetI	ASST	8 cut(s)	31, 37, 49, 71, 126, 139, 266, 275
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	2 cut(s)	30, 229
SinI	GGWCC	1 cut(s)	315
SphI	GCATGC	1 cut(s)	119
Sse8387I	CCTGCAGG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	177, 186
SsiI	CCGC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	126
TasI	AATT	2 cut(s)	177, 186
TatI	WGTACW	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	2 cut(s)	45, 176
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	119
Zsp2I	ATGCAT	2 cut(s)	157, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.