Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0022309

Physical Location & Seq

Genomic Coordinates Reverse (-)

49020821 .. 49021620

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTAGAGAAGTTCTGTGTGTTTTGCTGCGATTTCAGAATTTTGACCTCTCCCGACAATGTTGAAAAGAAATGCCTTGCCATAAGACTAGAAGTCCCAAAAGGCACTGCACGCCAATGTCACCGCCATTCCCTATACTTGGACTCACTGCAGCGATCACATCACCTTCTGGAAGGATGCACTACCATCATTTCTTCCCTTGATCGAAAGCTTGTAGAAGGGGGTCTCGGAATCTGGGTTATTGGTATTGGTGATACTGATGGCAGAGTTCCAGTGGCATTGAAGAAACTGGGATTGAAGATCAAGCAAGACTGGACTCCATGGTACAATAGCAAACAGGTAGACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

8.8

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022309)

Species	Orthologous Gene IDs
malus_domestica	MD13G1004300.v1.1
pyrus_communis	pycom13g00370
rosa_chinensis	RchiOBHm_Chr1g0330091
rosa_roxburghii	Rroxscaffold_4G00320390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	39
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	65, 283, 298
AhdI	GACNNNNNGTC	1 cut(s)	92
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	27, 151
ApoI	RAATTY	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	113, 155, 263
BbvI	GCAGC	2 cut(s)	14, 163
BccI	CCATC	2 cut(s)	194, 254
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	28, 152
BlsI	GCNGC	2 cut(s)	29, 153
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	4 cut(s)	272, 294, 317, 350
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	4 cut(s)	272, 294, 317, 350
BseXI	GCAGC	2 cut(s)	14, 163
BsgI	GTGCAG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	155, 202, 300
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	4 cut(s)	272, 294, 317, 350
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	155, 202, 300
BssT1I	CCWWGG	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	112
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	3 cut(s)	158, 205, 303
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	155, 202, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	14, 163
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	182
BtsI	GCAGTG	2 cut(s)	105, 146
BtsIMutI	CAGTG	3 cut(s)	105, 146, 279
Cac8I	GCNNGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	1 cut(s)	211
CviKI_1	RGCY	1 cut(s)	211
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	3 cut(s)	157, 204, 302
DpnII	GATC	3 cut(s)	155, 202, 300
DriI	GACNNNNNGTC	1 cut(s)	92
Eam1105I	GACNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	324
FaiI	YATR	3 cut(s)	83, 136, 322
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	28, 152
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	28, 152
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	28, 152
Hin1II	CATG	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	143, 231, 316
HphI	GGTGA	3 cut(s)	113, 155, 263
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	38, 230
Hpy188III	TCNNGA	2 cut(s)	53, 170
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	167, 176, 212
HpyCH4V	TGCA	3 cut(s)	110, 151, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	155, 202, 300
LpnPI	CCDG	7 cut(s)	155, 220, 275, 285, 298, 323, 331
Lsp1109I	GCAGC	2 cut(s)	14, 163
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	157, 204, 302
MboI	GATC	3 cut(s)	155, 202, 300
MboII	GAAGA	3 cut(s)	186, 295, 310
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	137, 310
MnlI	CCTC	1 cut(s)	58
MslI	CAYNNNNRTG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	3 cut(s)	155, 202, 300
NlaIII	CATG	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	29, 153
PleI	GAGTC	2 cut(s)	137, 310
PpsI	GAGTC	2 cut(s)	137, 310
PstI	CTGCAG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	115
SatI	GCNGC	2 cut(s)	28, 152
Sau3AI	GATC	3 cut(s)	155, 202, 300
SchI	GAGTC	2 cut(s)	137, 310
SetI	ASST	4 cut(s)	50, 168, 213, 342
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	320
TaqI	TCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	231
TscAI	CASTG	3 cut(s)	112, 153, 279
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	27, 151
Tsp45I	GTSAC	1 cut(s)	119
TspRI	CASTG	3 cut(s)	112, 153, 279
XapI	RAATTY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.