Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028277

Physical Location & Seq

Genomic Coordinates Forward (+)

4570062 .. 4571973

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1066100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTGCAAGGTCTGTCACTGAGCACTCTGACTGCGTTTCGCTATGGTGGGCTATGTGGGTCGATGCCTTCTTGGAGGAAGCAATTCAAACTAATGAGCAAAACCCCGATAAGTTCTGGTGTCGAAAGTTGTGGTATCTGGCATCTGGGCTGTCAAAGCTTATTTGTAAGAGGTAAAACCGATGTGGTAAGACAAAGGAATGTGAGGGTGGAAGCTGGGTGGCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

77

Amino Acids

8.48

Weight (kDa)

10.21

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028277)

Species	Orthologous Gene IDs
malus_domestica	MD13G1066100.v1.1
pyrus_communis	pycom13g05830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	159, 215
AluI	AGCT	2 cut(s)	159, 215
Alw21I	GWGCWC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	26
BmsI	GCATC	2 cut(s)	54, 151
BseMII	CTCAG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	17
CviJI	RGCY	5 cut(s)	52, 150, 159, 215, 223
CviKI_1	RGCY	5 cut(s)	52, 150, 159, 215, 223
DdeI	CTNAG	1 cut(s)	20
FaiI	YATR	2 cut(s)	45, 55
GsaI	CCCAGC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	102, 124, 131, 201
LweI	GCATC	2 cut(s)	54, 151
MaeIII	GTNAC	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	83
MnlI	CCTC	3 cut(s)	69, 164, 198
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	4 cut(s)	13, 161, 175, 217
SfaNI	GCATC	2 cut(s)	54, 151
SgeI	CNNG	6 cut(s)	20, 84, 118, 129, 151, 158
Sse9I	AATT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	62, 123
TasI	AATT	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	229
Tru9I	TTAA	1 cut(s)	229
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	15
TspRI	CASTG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.