Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028277

Physical Location & Seq

Genomic Coordinates Forward (+)

3823909 .. 3824913

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGCAAGGTCTGTCACTGAGCACTCTGACTGCGTTTTTCTATGGTGGGCTATGTGGGTCGATGCCTTCGTGGAGGAAGCAATTCAAACTAATGAGCAAAACCCCGATAAGTTCTGGTGTCGAAAGGTGTGGTATCTGGCATGTGGGCCGTCAAAGCTTATTTGTAAGAGGTAACACCGATGTGGTAAGACAAAGGAATGTGAGGGTGGAAGCTGGGTGGCTGTTTAAAGGGGGTGATCAGGGGTTGGATGCAAGCTCGGAGCGGAGCGAGAGTGCTAATGAGGATATTTTGATATTCTTTTTCCAGCTAGACCTGGCAACTCGAGTACAGTATGCTTTGAACACGGAACAGTATGATGTTGCACAACAACTAAGAAACAAGCTGACTGAGGTTGAAGCTGAGGTTATTAAGCAGCAGGAGGCAAAAAGGGGTCGTCTCCAAAGAGTGAAGCTCAAGATAAGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009368 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009840 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UVR YccV-like

Protein Analysis

157

Amino Acids

17.8

Weight (kDa)

9.87

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028277)

Species	Orthologous Gene IDs
malus_domestica	MD13G1066100.v1.1
pyrus_communis	pycom13g05830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	1 cut(s)	265
AfaI	GTAC	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	88, 343, 398
AjnI	CCWGG	1 cut(s)	315
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	7 cut(s)	159, 215, 258, 310, 385, 401, 454
AluI	AGCT	7 cut(s)	159, 215, 258, 310, 385, 401, 454
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	54, 241
BplI	GAGNNNNNCTC	2 cut(s)	438, 470
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	3 cut(s)	11, 381, 393
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	12, 382, 394
BsrBI	CCGCTC	1 cut(s)	265
BssMI	GATC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	333, 354
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	20, 374, 390, 402
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	4 cut(s)	20, 374, 390, 402
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	1 cut(s)	146
FaiI	YATR	5 cut(s)	45, 55, 144, 336, 357
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	157
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	30, 262
Hpy188III	TCNNGA	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	333, 354
HpyCH4V	TGCA	3 cut(s)	7, 254, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	4 cut(s)	20, 374, 390, 402
Hsp92II	CATG	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	262, 267
LpnPI	CCDG	8 cut(s)	102, 124, 201, 227, 302, 320, 329, 404
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	54, 241
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	15, 173
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	69, 164, 198, 277, 385, 397, 415
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	228, 411
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	324
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	228, 411
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	54, 241
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	324, 455
SmoI	CTYRAG	2 cut(s)	324, 455
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	333, 354
TaqI	TCGA	3 cut(s)	62, 123, 325
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	228, 411
Tru9I	TTAA	2 cut(s)	228, 411
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	24
XceI	RCATGY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.