Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028256

Physical Location & Seq

Genomic Coordinates Forward (+)

11417169 .. 11419321

Gene Structure 2153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1146200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAGAGACGTTTGTACCATTTCGCGGAATTAAGAATGATCTTCAAGGGAGAATGATGTGTTACAAGCAAGATTGGACTGGTGGTTTCAAGGCAGGCTTCAGGATTTTGGCGCCCACCACTTATATCTTTTTTGCATCCGCTATTCCGGTTATTTCATTTGGAGAACAATTGGAAAGAGATACAGGTGGGGTTCTCACAGCAGTTCAAACATTAGCATCTACGGCTTTGTGTGGAATTATACACTCGATTCTTGGGGGTCAGCCTTTGCTGATTCTCGGAGTTGCTGAACCAACTGTGATTATGTACACGTTTATGTTCAATTTTGCCAAAAATAGACCAGAGTTGGGATCAAAGCTCTTTTTAGCATGGAGTGGATGGGTGTGCGTCTGGACTGCAGCATTGCTGTTTATGCTGGCTATATTAGGGGCTTGCTCCATCATAAACAGATTCACTCGTCTTGCAGGAGAGTTATTTGGCCTTCTCATTGCAATGCTCTTCATGCAGGAAGCTATAAAAGGACTTGTTCATGAGTTCCGCATACCTGAAAGAGAAAACCCAAACTCAGTTCAATTTCAACCTTCATGGAGATTTGCAAATGGGATGTTTGCTTTGGTTCTGTCATTTGGCCTTCTACTTACTTCATTAAGAAGCAGAAAAGCAAGGTCTTGGCGTTATGGATCTGGCAAGTGTTATTTTGTCTGGAGTTACATACACACATGTATAATTTCAATTTATTACTTTGCTACAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

253

Amino Acids

28.41

Weight (kDa)

9.34

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	7 - 181	2.9e-35	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028256)

Species	Orthologous Gene IDs
malus_domestica	MD13G1146200.v1.1
pyrus_communis	pycom13g12590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	27, 141, 538
AclWI	GGATC	2 cut(s)	358, 688
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	2 cut(s)	18, 308
AfiI	CCNNNNNNNGG	2 cut(s)	26, 347
AflIII	ACRYGT	2 cut(s)	309, 719
AgsI	TTSAA	7 cut(s)	47, 91, 209, 322, 572, 578, 732
AluBI	AGCT	2 cut(s)	358, 512
AluI	AGCT	2 cut(s)	358, 512
Alw26I	GTCTC	2 cut(s)	2, 747
AlwI	GGATC	2 cut(s)	358, 688
AoxI	GGCC	2 cut(s)	478, 628
ApeKI	GCWGC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	115
BaeI	ACNNNNGTAYC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	2 cut(s)	372, 446
BceAI	ACGGC	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	2, 747
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	2 cut(s)	146, 227
BpmI	CTGGAG	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 347
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	3 cut(s)	401, 486, 498
BseGI	GGATG	3 cut(s)	137, 383, 609
BseLI	CCNNNNNNNGG	2 cut(s)	26, 347
BseMI	GCAATG	3 cut(s)	401, 486, 498
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	480, 630
BshNI	GGYRCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	26, 347
BsmAI	GTCTC	2 cut(s)	2, 747
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	480, 630
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	40, 350, 680
BspACI	CCGC	3 cut(s)	27, 141, 538
BspANI	GGCC	2 cut(s)	480, 630
BspCNI	CTCAG	1 cut(s)	578
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	358, 688
BspQI	GCTCTTC	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	112
BsrDI	GCAATG	3 cut(s)	401, 486, 498
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	40, 350, 680
BssNI	GRCGYC	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	97, 417, 433
BstDEI	CTNAG	1 cut(s)	565
BstF5I	GGATG	3 cut(s)	137, 383, 609
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	3 cut(s)	43, 353, 683
BstMAI	GTCTC	2 cut(s)	2, 747
BstMBI	GATC	3 cut(s)	40, 350, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 412, 502
BstNSI	RCATGY	1 cut(s)	723
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	480, 630
BtsCI	GGATG	3 cut(s)	137, 383, 609
Cac8I	GCNNGC	3 cut(s)	97, 417, 433
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	115
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	17, 307
CviAII	CATG	5 cut(s)	369, 502, 530, 585, 720
CviJI	RGCY	9 cut(s)	99, 227, 265, 358, 419, 431, 480, 512, 630
CviKI_1	RGCY	9 cut(s)	99, 227, 265, 358, 419, 431, 480, 512, 630
CviQI	GTAC	2 cut(s)	17, 307
DdeI	CTNAG	1 cut(s)	565
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	3 cut(s)	42, 352, 682
DpnII	GATC	3 cut(s)	40, 350, 680
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	5 cut(s)	372, 505, 533, 588, 723
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	5 cut(s)	368, 501, 529, 584, 719
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	3 cut(s)	124, 390, 616
Fsp4HI	GCNGC	1 cut(s)	399
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	724
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	480, 630
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	372, 505, 533, 588, 723
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	3 cut(s)	250, 274, 450
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	4 cut(s)	103, 391, 530, 703
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	3 cut(s)	491, 591, 641
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	11, 311
HpyCH4V	TGCA	6 cut(s)	137, 398, 464, 491, 505, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 412, 502
HpyF3I	CTNAG	1 cut(s)	565
HpySE526I	ACGT	2 cut(s)	11, 311
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	372, 505, 533, 588, 723
HspAI	GCGC	1 cut(s)	113
KasI	GGCGCC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	40, 350, 680
LguI	GCTCTTC	1 cut(s)	503
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	2 cut(s)	146, 227
MaeII	ACGT	2 cut(s)	11, 311
MaeIII	GTNAC	2 cut(s)	62, 707
MalI	GATC	3 cut(s)	42, 352, 682
MboI	GATC	3 cut(s)	40, 350, 680
MboII	GAAGA	3 cut(s)	17, 35, 490
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	680
MluCI	AATT	7 cut(s)	30, 170, 237, 322, 572, 726, 732
Mly113I	GGCGCC	1 cut(s)	113
MseI	TTAA	2 cut(s)	33, 647
MslI	CAYNNNNRTG	2 cut(s)	314, 491
MspI	CCGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	224, 412, 502
NarI	GGCGCC	1 cut(s)	113
NdeII	GATC	3 cut(s)	40, 350, 680
NlaIII	CATG	5 cut(s)	372, 505, 533, 588, 723
NlaIV	GGNNCC	1 cut(s)	114
NspI	RCATGY	1 cut(s)	723
PagI	TCATGA	1 cut(s)	529
PciI	ACATGT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	503
PfeI	GAWTC	3 cut(s)	250, 274, 450
PkrI	GCNGC	1 cut(s)	400
PluTI	GGCGCC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	680
RsaI	GTAC	2 cut(s)	18, 308
RsaNI	GTAC	2 cut(s)	17, 307
RseI	CAYNNNNRTG	2 cut(s)	314, 491
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	33, 647
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	40, 350, 680
SetI	ASST	8 cut(s)	14, 190, 314, 360, 514, 547, 583, 668
SfaNI	GCATC	2 cut(s)	146, 227
SfcI	CTRYAG	1 cut(s)	396
SfoI	GGCGCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	314, 491
Sse9I	AATT	7 cut(s)	30, 170, 237, 322, 572, 726, 732
SsiI	CCGC	3 cut(s)	27, 141, 538
SspDI	GGCGCC	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	2 cut(s)	14, 314
TaqI	TCGA	1 cut(s)	248
TasI	AATT	7 cut(s)	30, 170, 237, 322, 572, 726, 732
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	250, 274, 450
Tru1I	TTAA	2 cut(s)	33, 647
Tru9I	TTAA	2 cut(s)	33, 647
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	5 cut(s)	147, 490, 518, 573, 633
XceI	RCATGY	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.