Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028256

Physical Location & Seq

Genomic Coordinates Forward (+)

8766001 .. 8767424

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATCGTTCAAGGGAGAATGATGTGTTACAAGCAAGATTGGACTGGTGGTTTCAAGGCAGGCTTCAGGATTTTGGCGCCCACCACTTATATCTTTTTTGCATCTGCTATTCCGGTTATTTCATTTGGAGAGCAATTGGAAAGAGATACAGGTGGCGTTCTCACAGCAGTTCAAACATTAGCATCTACGGCTTTGTGTGGAATTATACACTCGATTCTTGGGGGTCAGCCTTTGCTGATTCTCGGAGTTGCTGAACCAACTGTGATTATGTACACGTTTATGTTCAATTTTGCTAAAAATAGACCAGAGTTGGGATCAAAGCTCTTTTTAGCATGGAGTGGATGGGTGTGCGTCTGGACTGCAGCATTGCTGTTCATGCTGGCTATATTAGGGGCTTGCTCCATCATAAACAGATTCACTCGTCTTGCAGGAGAGTTATTTGGCCTTCTCATTGCAATGCTCTTCATGCAGGAAGCTATAAAAGGACTTGTTCATGAGTTCCGCATACCTGAAAGAGAAAACCCAAACTCAGTTCAATTTCAACCTTCATGGAGATTTGCAAATGGGATGTTTGCTTTGGTTCTGTCATTTGGCCTTCTACTTACTTCATTAAGAAGCAGAAAAGCGAGGTCTTGGCGTTATGGATCAGGATGGCTACGAGGTTTCATAGCAGATTATGGCGTTCCATTGATGGTATTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

235

Amino Acids

26.05

Weight (kDa)

9.69

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	4 - 168	7.5e-32	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028256)

Species	Orthologous Gene IDs
malus_domestica	MD13G1146200.v1.1
pyrus_communis	pycom13g12590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	2 cut(s)	322, 652
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	11, 55, 173, 286, 536, 542
AluBI	AGCT	2 cut(s)	322, 476
AluI	AGCT	2 cut(s)	322, 476
AlwI	GGATC	2 cut(s)	322, 652
AoxI	GGCC	2 cut(s)	442, 592
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	4 cut(s)	336, 410, 645, 685
BceAI	ACGGC	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	110, 191
BsaHI	GRCGYC	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	3 cut(s)	365, 450, 462
BseGI	GGATG	3 cut(s)	347, 573, 656
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	3 cut(s)	365, 450, 462
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	2 cut(s)	444, 594
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	311
BsnI	GGCC	2 cut(s)	444, 594
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	3, 314, 644, 699
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	2 cut(s)	444, 594
BspCNI	CTCAG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	322, 652
BspQI	GCTCTTC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	365, 450, 462
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	4 cut(s)	3, 314, 644, 699
BssNI	GRCGYC	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	61, 381, 397
BstDEI	CTNAG	1 cut(s)	529
BstF5I	GGATG	3 cut(s)	347, 573, 656
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	4 cut(s)	6, 317, 647, 702
BstMBI	GATC	4 cut(s)	3, 314, 644, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 376, 466
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	444, 594
BtsCI	GGATG	3 cut(s)	347, 573, 656
Cac8I	GCNNGC	3 cut(s)	61, 381, 397
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	79
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	5 cut(s)	333, 376, 466, 494, 549
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	529
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	4 cut(s)	5, 316, 646, 701
DpnII	GATC	4 cut(s)	3, 314, 644, 699
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	49
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaeI	CATG	5 cut(s)	336, 379, 469, 497, 552
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	5 cut(s)	332, 375, 465, 493, 548
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	3 cut(s)	354, 580, 663
Fsp4HI	GCNGC	1 cut(s)	363
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	444, 594
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	336, 379, 469, 497, 552
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	3 cut(s)	214, 238, 414
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	2 cut(s)	245, 704
Hpy188III	TCNNGA	4 cut(s)	67, 355, 494, 648
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	3 cut(s)	455, 555, 605
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	101, 362, 428, 455, 469, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 376, 466
HpyF3I	CTNAG	1 cut(s)	529
HpySE526I	ACGT	1 cut(s)	275
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	5 cut(s)	336, 379, 469, 497, 552
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	3, 314, 644, 699
LguI	GCTCTTC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	110, 191
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	5, 316, 646, 701
MboI	GATC	4 cut(s)	3, 314, 644, 699
MboII	GAAGA	1 cut(s)	454
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	4 cut(s)	134, 201, 286, 536
Mly113I	GGCGCC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	621, 653
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	2 cut(s)	278, 455
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	188, 376, 466
NarI	GGCGCC	1 cut(s)	77
NdeII	GATC	4 cut(s)	3, 314, 644, 699
NlaIII	CATG	5 cut(s)	336, 379, 469, 497, 552
NlaIV	GGNNCC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	214, 238, 414
PkrI	GCNGC	1 cut(s)	364
PluTI	GGCGCC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	278, 455
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	4 cut(s)	3, 314, 644, 699
SetI	ASST	8 cut(s)	154, 278, 324, 478, 511, 547, 632, 664
SfaNI	GCATC	2 cut(s)	110, 191
SfcI	CTRYAG	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	278, 455
Sse9I	AATT	4 cut(s)	134, 201, 286, 536
SsiI	CCGC	1 cut(s)	502
SspDI	GGCGCC	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	212
TasI	AATT	4 cut(s)	134, 201, 286, 536
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	214, 238, 414
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	7 cut(s)	111, 364, 454, 482, 537, 597, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.