MD13G1241300.v1.1

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0028283
Physical Location & Seq
Reverse (-)
25097590 .. 25097922
333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1241300.v1.1.491

Sequence Viewer

Length: 333 bp
ATGATCGTCTATGCCTTTGTCCTCCTCCCTTACTTCATGGTTGTCTTGGCATCGTCTACGACGTCATCATTGAGCCCCCGGGCATCGGATCAACTGAGGACCACCTTTTTCCCCGACCGGGTCAACGAGCAGTACATAAATCGAATGTCTATCTTTCGGGTTCATGTTCATTCTGGGTGGGATCGGCATTGTGCACATGGACTTGCCCGGGATCGAAATCGTGTAAAAAGTGTGATAGTGTCGTATGCTACTGCTGGGATTTCCTCTGTCGTTCTCGCTTATGTTATGAGTATGCTGCTTATTTGTATCAAGATCCCAGGTTATCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

9.75

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028283)

Species Orthologous Gene IDs
malus_domestica MD13G1241300.v1.1
pyrus_communis pycom13g21180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 56
AclWI GGATC 4 cut(s) 96, 189, 219, 307
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 85, 118
AjnI CCWGG 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 196
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 4 cut(s) 96, 189, 219, 307
Ama87I CYCGRG 2 cut(s) 78, 207
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 5 cut(s) 79, 80, 119, 208, 209
AvaI CYCGRG 2 cut(s) 78, 207
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 5 cut(s) 79, 80, 119, 208, 209
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 6 cut(s) 79, 80, 119, 208, 209, 318
Bme18I GGWCC 1 cut(s) 99
BmeT110I CYCGRG 2 cut(s) 78, 207
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 6 cut(s) 79, 80, 119, 208, 209, 318
BmsI GCATC 2 cut(s) 59, 92
BpuMI CCSGG 5 cut(s) 79, 80, 119, 208, 209
BsaBI GATNNNNATC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 4 cut(s) 77, 78, 207, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 118
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 77, 78, 207, 316
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 85, 118
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 196
BsiHKCI CYCGRG 2 cut(s) 78, 207
BsiSI CCGG 3 cut(s) 79, 118, 208
BslI CCNNNNNNNGG 2 cut(s) 85, 118
BsoBI CYCGRG 2 cut(s) 78, 207
Bsp1286I GDGCHC 2 cut(s) 77, 196
Bsp143I GATC 5 cut(s) 3, 88, 181, 211, 312
BspCNI CTCAG 1 cut(s) 87
BspPI GGATC 4 cut(s) 96, 189, 219, 307
BssECI CCNNGG 4 cut(s) 77, 78, 207, 316
BssMI GATC 5 cut(s) 3, 88, 181, 211, 312
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 5 cut(s) 6, 91, 184, 214, 315
BstMBI GATC 5 cut(s) 3, 88, 181, 211, 312
BstMCI CGRYCG 1 cut(s) 118
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 6 cut(s) 77, 78, 117, 206, 207, 316
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 99
Cfr9I CCCGGG 2 cut(s) 78, 207
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 37, 164, 197
CviJI RGCY 1 cut(s) 75
CviKI_1 RGCY 1 cut(s) 75
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 95
DpnI GATC 5 cut(s) 5, 90, 183, 213, 314
DpnII GATC 5 cut(s) 3, 88, 181, 211, 312
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 99
Eco88I CYCGRG 2 cut(s) 78, 207
EcoRII CCWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 3 cut(s) 40, 167, 200
FaiI YATR 9 cut(s) 12, 38, 137, 165, 198, 246, 282, 287, 293
FatI CATG 3 cut(s) 36, 163, 196
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 258
HapII CCGG 3 cut(s) 79, 118, 208
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 40, 167, 200
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HpaII CCGG 3 cut(s) 79, 118, 208
Hpy166II GTNNAC 3 cut(s) 57, 124, 194
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 3 cut(s) 57, 124, 194
Hpy99I CGWCG 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 40, 167, 200
Kzo9I GATC 5 cut(s) 3, 88, 181, 211, 312
LpnPI CCDG 6 cut(s) 92, 131, 159, 221, 240, 303
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 59, 92
MaeII ACGT 1 cut(s) 62
MalI GATC 5 cut(s) 5, 90, 183, 213, 314
MboI GATC 5 cut(s) 3, 88, 181, 211, 312
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 77, 196
MnlI CCTC 4 cut(s) 32, 35, 90, 274
MseI TTAA 1 cut(s) 331
MspI CCGG 3 cut(s) 79, 118, 208
MspR9I CCNGG 6 cut(s) 79, 80, 119, 208, 209, 318
MvaI CCWGG 1 cut(s) 318
NciI CCSGG 5 cut(s) 79, 80, 119, 208, 209
NdeII GATC 5 cut(s) 3, 88, 181, 211, 312
NlaIII CATG 3 cut(s) 40, 167, 200
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 5 cut(s) 3, 88, 181, 211, 312
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 6 cut(s) 79, 80, 119, 208, 209, 318
SduI GDGCHC 2 cut(s) 77, 196
SetI ASST 3 cut(s) 65, 107, 322
SfaNI GCATC 2 cut(s) 59, 92
SinI GGWCC 1 cut(s) 99
SmaI CCCGGG 2 cut(s) 80, 209
StyD4I CCNGG 6 cut(s) 77, 78, 117, 206, 207, 316
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 142, 214
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 25, 152, 158
TspMI CCCGGG 2 cut(s) 78, 207
Tth111I GACNNNGTC 1 cut(s) 119
VneI GTGCAC 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 99
XmaI CCCGGG 2 cut(s) 78, 207
XmiI GTMKAC 1 cut(s) 56
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.