pycom13g21180

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0028283
Physical Location & Seq
Forward (+)
17427201 .. 17427671
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21180.2

Sequence Viewer

Length: 303 bp
ATGCCTCCAAAATCCGAGACCCTGCCTCCATCCACCTCCATTGACCCAATTCTCCTCATCCTCGGATTCTCCCCTACAGCTTCCTCCGCCCCCCGGGCATCGGATCAACTCAGGACCACTTTCTTCCCCGACCGGGTCAACGGGCAGTACATAAATCGAATGTCTATCTTCTGGGTTCATGTTCGTTCTGGGTGGGATCGTGTGATGGTGTCGCATGCCACTGCTGGGATTTCCTCTGTCGTTCTCGCCTATGTTATGAGTATGCTGTTTATTCGTATCAAGATCCCAGGTTATCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

101

Amino Acids

11.17

Weight (kDa)

9.98

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028283)

Species Orthologous Gene IDs
malus_domestica MD13G1241300.v1.1
pyrus_communis pycom13g21180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AclWI GGATC 3 cut(s) 111, 204, 277
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 3 cut(s) 111, 204, 277
Ama87I CYCGRG 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 3 cut(s) 94, 95, 134
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 114
BccI CCATC 2 cut(s) 37, 199
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 3 cut(s) 94, 95, 134
BcoDI GTCTC 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 95
Bme1390I CCNGG 4 cut(s) 94, 95, 134, 288
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 4 cut(s) 94, 95, 134, 288
BmsI GCATC 1 cut(s) 107
BpuMI CCSGG 3 cut(s) 94, 95, 134
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 61, 92, 93, 286
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 61, 92, 93, 286
BseGI GGATG 2 cut(s) 29, 57
BseLI CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 44
BseYI CCCAGC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 94, 133
BslI CCNNNNNNNGG 4 cut(s) 93, 100, 133, 225
BsmAI GTCTC 1 cut(s) 11
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 3 cut(s) 103, 196, 282
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 123
BspPI GGATC 3 cut(s) 111, 204, 277
BspTNI GGTCTC 1 cut(s) 11
BssECI CCNNGG 4 cut(s) 61, 92, 93, 286
BssMI GATC 3 cut(s) 103, 196, 282
Bst2UI CCWGG 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 29, 57
BstKTI GATC 3 cut(s) 106, 199, 285
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 103, 196, 282
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 92, 93, 132, 286
BstSFI CTRYAG 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BtsCI GGATG 2 cut(s) 29, 57
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 114
Cfr9I CCCGGG 1 cut(s) 93
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 2 cut(s) 179, 215
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 105, 198, 284
DpnII GATC 3 cut(s) 103, 196, 282
EciI GGCGGA 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 182, 218
FaiI YATR 6 cut(s) 152, 180, 216, 252, 257, 263
FatI CATG 2 cut(s) 178, 214
FokI GGATG 2 cut(s) 16, 44
GsaI CCCAGC 1 cut(s) 228
HapII CCGG 2 cut(s) 94, 133
Hin1II CATG 2 cut(s) 182, 218
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 94, 133
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 16, 65, 103
Hpy188III TCNNGA 2 cut(s) 112, 280
Hpy8I GTNNAC 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 2 cut(s) 182, 218
Kzo9I GATC 3 cut(s) 103, 196, 282
LpnPI CCDG 8 cut(s) 35, 97, 107, 146, 157, 174, 210, 273
LweI GCATC 1 cut(s) 107
MalI GATC 3 cut(s) 105, 198, 284
MboI GATC 3 cut(s) 103, 196, 282
MboII GAAGA 2 cut(s) 115, 160
MflI RGATCY 1 cut(s) 282
MluCI AATT 1 cut(s) 48
MnlI CCTC 7 cut(s) 15, 36, 46, 65, 71, 94, 244
MseI TTAA 1 cut(s) 301
MspI CCGG 2 cut(s) 94, 133
MspR9I CCNGG 4 cut(s) 94, 95, 134, 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NciI CCSGG 3 cut(s) 94, 95, 134
NdeII GATC 3 cut(s) 103, 196, 282
NlaIII CATG 2 cut(s) 182, 218
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 134
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 301
Sau3AI GATC 3 cut(s) 103, 196, 282
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 4 cut(s) 94, 95, 134, 288
SetI ASST 3 cut(s) 38, 82, 292
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 95
SphI GCATGC 1 cut(s) 218
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 92, 93, 132, 286
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 167
TspMI CCCGGG 1 cut(s) 93
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.