Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0028240

Physical Location & Seq

Genomic Coordinates Reverse (-)

35791271 .. 35791774

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1269900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTCATTATTGAATCAAAGGAACTCCACTTGTACCTTGTTGGTGAACAAAATGCTTAAGCCGGAGAAGCGGCAGGCAACATTTGATACCGATGGGAAGATTTTTGGTTTTCAGAAGGCACTCAAATTAATAGTATTGGGGGTGTGTTGTTTTACCATGAAATATATTATGTGTCTCATATGTAGTGAGTTTCTTAAAACATTTCAATTGAAATTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030659 GO:0030695 GO:0031090 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

74

Amino Acids

8.45

Weight (kDa)

9.47

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028240)

Species	Orthologous Gene IDs
malus_domestica	MD13G1269900.v1.1
pyrus_communis	pycom13g26950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	212
AfaI	GTAC	1 cut(s)	34
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	13, 206, 211
Alw26I	GTCTC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	55
BccI	CCATC	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	179
BspACI	CCGC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	1 cut(s)	61
CviKI_1	RGCY	1 cut(s)	61
CviQI	GTAC	1 cut(s)	33
FaeI	CATG	1 cut(s)	160
FaiI	YATR	6 cut(s)	158, 165, 170, 179, 181, 220
FatI	CATG	1 cut(s)	156
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	71
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	160
LpnPI	CCDG	2 cut(s)	59, 75
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	3 cut(s)	125, 206, 212
MseI	TTAA	3 cut(s)	57, 128, 195
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeI	CATATG	1 cut(s)	179
NlaIII	CATG	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	128
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	57, 128, 195
SatI	GCNGC	1 cut(s)	71
SetI	ASST	1 cut(s)	38
SgeI	CNNG	5 cut(s)	42, 49, 74, 86, 169
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	125, 206, 212
SsiI	CCGC	1 cut(s)	70
TasI	AATT	3 cut(s)	125, 206, 212
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	57, 128, 195
Tru9I	TTAA	3 cut(s)	57, 128, 195
TspDTI	ATGAA	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	128
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.