pycom13g26950

RAB GTPase activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0028240
Physical Location & Seq
Forward (+)
23411226 .. 23412452
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26950.8

Sequence Viewer

Length: 849 bp
ATGTCCTTCATGCGCAGATTGGCTGAAAGAGAGAAAGGGAAAGAAAATGTGATAAATAATACACCTATCACACTTACCCGTAAAAATTGTCAAATACAACAGTACTATGCCATGATTTGGTTTATGACTGATGTGAGATTGTACGTTCCCTCACATGTTTTTTTTTTTTGTAGCATATCATGCACCAATGTCATTATTGAATCAAAGGAACTCCACTTGCACCTTTTTGGGTTTTTGGTCAAGGATGAGGGCATTAGAAGTGAGTCACATATAAACTTACGTCAGATCTTTCTATTAGTTTGGGAAGTACCACTAGTCGACCTCCATGTAATTAAATACCATAATGAGTTTTCTTTTGTTCATTGTTGTAATCGTGATAGAGCATTGTTGTTTTATGTTCCAATGGTTCAGGTGAACAAAATGCTTAAGCCGGAGAAGTGGCAGGCACCATTTGATAGTGATGGGAAGATTTTAGGTTTTCAGAAGACACTCAAATTAATAGTAGTGTATTGTTTTACCATGAAATATATTATGTGTCTCATATGTAGTCTGTTTATGTTATATTTTATGACTAATTTATGCCCTCTATTTGCAACATCCATAATCCTCTCACTTGATTTCATCGCCTTTAGAAACGTGGTAAAACTGTATGAAGAGAAGTTGCACATACTTATATATTTGGTACCACGTGTACTGTCAGCTGTGAATCGGCATGGCATTTCTGTTCACTCTGTCCTAAACGTTAACTATCCTGGTGGTATTCTTTTGGGATTTTCAATAATCATAGTCCGGCTTACTGTTCTTGATTTGTTTGTGAAAGAGCAATTTGTTTCATACGTGTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RabGAP-TBC

Protein Analysis

283

Amino Acids

33.14

Weight (kDa)

9.0

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028240)

Species Orthologous Gene IDs
malus_domestica MD13G1269900.v1.1
pyrus_communis pycom13g26950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 14
Acc65I GGTACC 1 cut(s) 682
AccB1I GGYRCC 2 cut(s) 445, 682
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 318
AclI AACGTT 1 cut(s) 741
AcvI CACGTG 1 cut(s) 689
AfaI GTAC 5 cut(s) 104, 143, 309, 684, 693
AfiI CCNNNNNNNGG 1 cut(s) 117
AflII CTTAAG 1 cut(s) 425
AflIII ACRYGT 3 cut(s) 154, 688, 837
AgsI TTSAA 2 cut(s) 200, 777
AhlI ACTAGT 1 cut(s) 313
AjnI CCWGG 1 cut(s) 751
AluBI AGCT 1 cut(s) 701
AluI AGCT 1 cut(s) 701
Alw26I GTCTC 1 cut(s) 542
AseI ATTAAT 1 cut(s) 497
Asp718I GGTACC 1 cut(s) 682
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 424
BanI GGYRCC 2 cut(s) 445, 682
BbrPI CACGTG 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 491
BccI CCATC 1 cut(s) 455
BciT130I CCWGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 542
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 1 cut(s) 314
BfrI CTTAAG 1 cut(s) 425
BglII AGATCT 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 753
BmiI GGNNCC 2 cut(s) 447, 684
BmrFI CCNGG 1 cut(s) 753
BpiI GAAGAC 1 cut(s) 491
BsaAI YACGTR 2 cut(s) 689, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 753
BseGI GGATG 2 cut(s) 250, 596
BseLI CCNNNNNNNGG 1 cut(s) 117
BshNI GGYRCC 2 cut(s) 445, 682
BsiSI CCGG 2 cut(s) 431, 790
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 542
Bsp143I GATC 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 447, 684
BspT107I GGYRCC 2 cut(s) 445, 682
BspTI CTTAAG 1 cut(s) 425
BssMI GATC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 4 cut(s) 102, 648, 696, 799
Bst6I CTCTTC 1 cut(s) 648
BstAFI CTTAAG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 180
BstBAI YACGTR 2 cut(s) 689, 838
BstC8I GCNNGC 1 cut(s) 444
BstF5I GGATG 2 cut(s) 250, 596
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 607
BtsCI GGATG 2 cut(s) 250, 596
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 1 cut(s) 15
Csp6I GTAC 5 cut(s) 103, 142, 308, 683, 692
CviAII CATG 7 cut(s) 10, 112, 155, 180, 326, 520, 713
CviJI RGCY 4 cut(s) 23, 430, 701, 793
CviKI_1 RGCY 4 cut(s) 23, 430, 701, 793
CviQI GTAC 5 cut(s) 103, 142, 308, 683, 692
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco72I CACGTG 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 751
FaeI CATG 7 cut(s) 13, 115, 158, 183, 329, 523, 716
FatI CATG 7 cut(s) 9, 111, 154, 179, 325, 519, 712
FauNDI CATATG 1 cut(s) 542
FblI GTMKAC 1 cut(s) 318
FokI GGATG 2 cut(s) 257, 583
FspBI CTAG 1 cut(s) 314
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 1 cut(s) 14
HapII CCGG 2 cut(s) 431, 790
HhaI GCGC 1 cut(s) 15
Hin1II CATG 7 cut(s) 13, 115, 158, 183, 329, 523, 716
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 2 cut(s) 319, 745
HindII GTYRAC 2 cut(s) 319, 745
HinfI GANTC 3 cut(s) 200, 263, 706
HpaI GTTAAC 1 cut(s) 745
HpaII CCGG 2 cut(s) 431, 790
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 5 cut(s) 319, 415, 692, 727, 745
Hpy188I TCNGA 2 cut(s) 285, 483
Hpy188III TCNNGA 2 cut(s) 374, 803
Hpy8I GTNNAC 5 cut(s) 319, 415, 692, 727, 745
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 4 cut(s) 102, 648, 696, 799
HpyCH4IV ACGT 6 cut(s) 144, 280, 636, 688, 741, 837
HpyCH4V TGCA 4 cut(s) 183, 220, 593, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpySE526I ACGT 6 cut(s) 144, 280, 636, 688, 741, 837
Hsp92II CATG 7 cut(s) 13, 115, 158, 183, 329, 523, 716
HspAI GCGC 1 cut(s) 13
KpnI GGTACC 1 cut(s) 686
KspAI GTTAAC 1 cut(s) 745
Kzo9I GATC 1 cut(s) 285
LpnPI CCDG 6 cut(s) 395, 428, 444, 738, 765, 803
MaeI CTAG 1 cut(s) 314
MaeII ACGT 6 cut(s) 144, 280, 636, 688, 741, 837
MaeIII GTNAC 1 cut(s) 264
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 3 cut(s) 478, 496, 665
MflI RGATCY 1 cut(s) 285
MluCI AATT 5 cut(s) 85, 330, 494, 574, 824
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 5 cut(s) 160, 241, 332, 594, 617
MseI TTAA 5 cut(s) 333, 426, 497, 744, 847
MspA1I CMGCKG 1 cut(s) 701
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 2 cut(s) 431, 790
MspR9I CCNGG 1 cut(s) 753
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeI CATATG 1 cut(s) 542
NdeII GATC 1 cut(s) 285
NlaIII CATG 7 cut(s) 13, 115, 158, 183, 329, 523, 716
NlaIV GGNNCC 2 cut(s) 447, 684
NmuCI GTSAC 1 cut(s) 264
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PfeI GAWTC 2 cut(s) 200, 706
PflMI CCANNNNNTGG 1 cut(s) 117
PleI GAGTC 1 cut(s) 271
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 1 cut(s) 271
Ppu21I YACGTR 2 cut(s) 689, 838
PscI ACATGT 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 751
PspCI CACGTG 1 cut(s) 689
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 2 cut(s) 447, 684
PsuI RGATCY 1 cut(s) 285
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 5 cut(s) 104, 143, 309, 684, 693
RsaNI GTAC 5 cut(s) 103, 142, 308, 683, 692
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 5 cut(s) 333, 426, 497, 744, 847
Sau3AI GATC 1 cut(s) 285
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SpeI ACTAGT 1 cut(s) 313
Sse9I AATT 5 cut(s) 85, 330, 494, 574, 824
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 751
TaaI ACNGT 4 cut(s) 102, 648, 696, 799
TaiI ACGT 6 cut(s) 147, 283, 639, 691, 744, 840
TaqI TCGA 1 cut(s) 318
TasI AATT 5 cut(s) 85, 330, 494, 574, 824
TatI WGTACW 2 cut(s) 102, 691
TfiI GAWTC 2 cut(s) 200, 706
Tru1I TTAA 5 cut(s) 333, 426, 497, 744, 847
Tru9I TTAA 5 cut(s) 333, 426, 497, 744, 847
TseFI GTSAC 1 cut(s) 264
Tsp45I GTSAC 1 cut(s) 264
TspDTI ATGAA 5 cut(s) 350, 536, 610, 666, 822
Van91I CCANNNNNTGG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 425
VspI ATTAAT 1 cut(s) 497
XceI RCATGY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 1 cut(s) 314
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.