Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0024268

Physical Location & Seq

Genomic Coordinates Forward (+)

2200632 .. 2201767

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1024200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTTGTGTTCCTCCTGCATTGTGATTGCTGGTCTAGAATTGGAGAATTTCTGTTGAGAGTTGAGGTAATGGGTGGATGCATTTCAACAATGCAGGGGAGGGCGAAGTCGTCTCAATCAAGGCCTTCTTCAAAGAGTGGATATCCTCAAGCCCATTTGCCAGCTTCTGAAGAAACTCAGAGCTATTACAATTCCCTGATTGAGGTGACTCGGGCTCTTGAACATGCTGGTCTCGAGTCTTCCAATCTTATTGTGGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTAACACAAGAAGCTTGCACCACATTGGGGATTGTGGTCCAAATCCCTATGAACAGGCGATATCCACTATTGGAAAAATCTTGGCTGGTTTCGATGAGGATAACTTAATTCCATGTTTTGGCTTTGGAGATGCGACAACCCATGATGAAGATGTCTTCAGTTTTTATCCGGATGACAGACTTTGCAACGGATTTGAGGAAGTATTGACAACCTACAGGAAAATTGTTCCTTTTCTACAACTTGCAGGTCCAACTTCATTTGCACCTATAATTCAAATGGCCATGTCTATCGTTGAGAAGAGTGGTGGCCAATTCCATGTCCTGTTGATAATTACGAGCGGTCAGGTATTTTGCCTAAATATCGTTTTCTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

226

Amino Acids

24.85

Weight (kDa)

5.17

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	105 - 216	8.7e-38	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024268)

Species	Orthologous Gene IDs
malus_domestica	MD14G1024200.v1.1
pyrus_communis	pycom14g02350
rosa_multiflora	Rmu_co8240307.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	639
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	1 cut(s)	639
AcoI	YGGCCR	2 cut(s)	579, 607
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	2 cut(s)	189, 442
AfiI	CCNNNNNNNGG	3 cut(s)	202, 328, 419
AgsI	TTSAA	4 cut(s)	87, 132, 221, 575
AluBI	AGCT	3 cut(s)	164, 183, 315
AluI	AGCT	3 cut(s)	164, 183, 315
Alw26I	GTCTC	2 cut(s)	117, 236
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	2 cut(s)	210, 233
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	3 cut(s)	122, 579, 607
ApoI	RAATTY	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	338, 548
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	2 cut(s)	210, 233
AvaII	GGWCC	2 cut(s)	338, 548
BalI	TGGCCA	2 cut(s)	581, 609
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	2 cut(s)	231, 448
BcoDI	GTCTC	2 cut(s)	117, 236
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	536
Bme18I	GGWCC	2 cut(s)	338, 548
BmeT110I	CYCGRG	2 cut(s)	210, 233
BmgT120I	GGNCC	2 cut(s)	338, 548
BmsI	GCATC	2 cut(s)	68, 421
BpiI	GAAGAC	2 cut(s)	231, 448
BpuEI	CTTGAG	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 328, 419
Bse3DI	GCAATG	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	469
BseGI	GGATG	2 cut(s)	83, 478
BseLI	CCNNNNNNNGG	3 cut(s)	202, 328, 419
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	124, 581, 609
BsiHKCI	CYCGRG	2 cut(s)	210, 233
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	202, 328, 419
BsmAI	GTCTC	2 cut(s)	117, 236
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	3 cut(s)	124, 581, 609
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	2 cut(s)	210, 233
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	469
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	3 cut(s)	124, 581, 609
BspCNI	CTCAG	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	162, 317
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	83, 478
BstMAI	GTCTC	2 cut(s)	117, 236
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	514
BstV2I	GAAGAC	2 cut(s)	231, 448
BsuRI	GGCC	3 cut(s)	124, 581, 609
BtsCI	GGATG	2 cut(s)	83, 478
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	162, 317
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	338, 548
CviAII	CATG	5 cut(s)	224, 414, 443, 583, 617
DdeI	CTNAG	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	579, 607
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	2 cut(s)	143, 363
Eco47I	GGWCC	2 cut(s)	338, 548
Eco57I	CTGAAG	2 cut(s)	189, 442
Eco88I	CYCGRG	2 cut(s)	210, 233
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRV	GATATC	2 cut(s)	143, 363
EcoT22I	ATGCAT	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	5 cut(s)	227, 417, 446, 586, 620
FaiI	YATR	8 cut(s)	225, 260, 351, 415, 444, 569, 584, 618
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	5 cut(s)	223, 413, 442, 582, 616
FokI	GGATG	2 cut(s)	90, 485
FriOI	GRGCYC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	124, 581, 609
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	5 cut(s)	227, 417, 446, 586, 620
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	2 cut(s)	208, 236
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	169, 180
Hpy188III	TCNNGA	4 cut(s)	36, 218, 233, 470
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	135, 288
HpyCH4V	TGCA	7 cut(s)	19, 81, 94, 319, 486, 545, 563
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	227, 417, 446, 586, 620
Kpn2I	TCCGGA	1 cut(s)	469
LweI	GCATC	2 cut(s)	68, 421
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	205
MbiI	CCGCTC	1 cut(s)	639
MboII	GAAGA	6 cut(s)	120, 182, 231, 448, 461, 610
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	2 cut(s)	581, 609
MluCI	AATT	8 cut(s)	39, 47, 190, 408, 522, 570, 611, 630
MluNI	TGGCCA	2 cut(s)	581, 609
MlyI	GAGTC	2 cut(s)	202, 245
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	7 cut(s)	23, 58, 93, 156, 196, 391, 490
Mox20I	TGGCCA	2 cut(s)	581, 609
Mph1103I	ATGCAT	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	469
MscI	TGGCCA	2 cut(s)	581, 609
MseI	TTAA	2 cut(s)	303, 407
Msp20I	TGGCCA	2 cut(s)	581, 609
MspI	CCGG	1 cut(s)	470
NlaIII	CATG	5 cut(s)	227, 417, 446, 586, 620
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	419
PleI	GAGTC	2 cut(s)	202, 244
PpsI	GAGTC	2 cut(s)	202, 244
PspPI	GGNCC	2 cut(s)	338, 548
PstNI	CAGNNNCTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	303, 407
Sau96I	GGNCC	2 cut(s)	338, 548
SchI	GAGTC	2 cut(s)	202, 245
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	68, 421
SfcI	CTRYAG	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	338, 548
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	147, 233
SmoI	CTYRAG	2 cut(s)	147, 233
Sse9I	AATT	8 cut(s)	39, 47, 190, 408, 522, 570, 611, 630
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	234, 393
TasI	AATT	8 cut(s)	39, 47, 190, 408, 522, 570, 611, 630
Tru1I	TTAA	2 cut(s)	303, 407
Tru9I	TTAA	2 cut(s)	303, 407
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	366, 462, 546
TspGWI	ACGGA	1 cut(s)	504
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	338, 548
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	35
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.