Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0024267

Physical Location & Seq

Genomic Coordinates Forward (+)

20045016 .. 20046271

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1125300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGAAGCATTATACGTATTCAAATTTATCAGAAAACTCTCAAATATTTGTTTCTTCCTTTTTCCATTTGATATCATCACTAGCGGAGACGTTTGTGTTTATATACATGGGTTTTGATATTGCCAAGGAACAACATAGCTGGTCACATTATAGTTGCAAGGGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031410 GO:0031982 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

56

Amino Acids

6.43

Weight (kDa)

6.37

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024267)

Species	Orthologous Gene IDs
malus_domestica	MD14G1125300.v1.1
pyrus_communis	pycom02g13630 pycom14g00660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	21
AluBI	AGCT	2 cut(s)	138, 165
AluI	AGCT	2 cut(s)	138, 165
Alw26I	GTCTC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstSNI	TACGTA	1 cut(s)	15
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	2 cut(s)	138, 165
CviKI_1	RGCY	2 cut(s)	138, 165
Eco105I	TACGTA	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	1 cut(s)	109
FaiI	YATR	6 cut(s)	12, 101, 103, 107, 135, 150
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	14, 89
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	14, 89
Hsp92II	CATG	1 cut(s)	109
LpnPI	CCDG	1 cut(s)	124
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	14, 89
MaeIII	GTNAC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	45
MluCI	AATT	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	15
SatI	GCNGC	1 cut(s)	163
SetI	ASST	4 cut(s)	17, 92, 140, 167
SgeI	CNNG	4 cut(s)	92, 118, 136, 151
SnaBI	TACGTA	1 cut(s)	15
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	123
TaiI	ACGT	2 cut(s)	17, 92
TasI	AATT	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.