Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0024262

Physical Location & Seq

Genomic Coordinates Forward (+)

26625667 .. 26626609

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1172400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGAAGTGGTGGTTGTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTTGAGGATTATGTCCACAGGATTGGAAGAACTGGACGTGCAGGAGCAACAGGAACTGCTTTAACCTTTTTCACGCACGCAAACGCAAAATTCGCTAGGGATCTAATCAAGATCCTTCAAGATGCAGGTCAGGTTGTGAGCCCCGCATTGGCTACAATGGCCCGATCAAGTGGTAGTTTCGGAGGATCCGGAGGGAACTTCCGCAATAGAGGACGAGGAGGAGGATTTGGGAACCGGGGCATGATTTCTGGTTCAAATACCGTTCCTATCGGTTACAAGAGACCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

119

Amino Acids

12.39

Weight (kDa)

10.21

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	2 - 37	2.3e-10	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024262)

Species	Orthologous Gene IDs
malus_domestica	MD14G1172400.v1.1
pyrus_communis	pycom11g03150
rosa_multiflora	Rmu_co8128650.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	254
AciI	CCGC	2 cut(s)	210, 268
AclWI	GGATC	4 cut(s)	172, 174, 246, 259
AcsI	RAATTY	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	185, 321
AjiI	CACGTC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	4 cut(s)	172, 174, 246, 259
AlwNI	CAGNNNCTG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	254
AoxI	GGCC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	209
BccI	CCATC	1 cut(s)	67
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	253, 299
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	301, 350
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	103
BseAI	TCCGGA	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	301, 350
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	2 cut(s)	297, 300
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	255, 301
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	42, 166, 177, 230, 251
BspACI	CCGC	2 cut(s)	210, 268
BspANI	GGCC	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	253, 299
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	4 cut(s)	172, 174, 246, 259
BspTNI	GGTCTC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	301, 350
BssMI	GATC	5 cut(s)	42, 166, 177, 230, 251
BssT1I	CCWWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	144
BstKTI	GATC	5 cut(s)	45, 169, 180, 233, 254
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	5 cut(s)	42, 166, 177, 230, 251
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 224
BstSCI	CCNGG	1 cut(s)	300
BstX2I	RGATCY	3 cut(s)	166, 177, 251
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	3 cut(s)	166, 177, 251
BsuRI	GGCC	1 cut(s)	227
BtrI	CACGTC	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	226
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	4 cut(s)	66, 207, 218, 227
CviKI_1	RGCY	4 cut(s)	66, 207, 218, 227
DpnI	GATC	5 cut(s)	44, 168, 179, 232, 253
DpnII	GATC	5 cut(s)	42, 166, 177, 230, 251
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	1 cut(s)	310
FaiI	YATR	4 cut(s)	32, 51, 78, 308
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	209
FspBI	CTAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	255, 301
Hin1II	CATG	1 cut(s)	310
HpaII	CCGG	2 cut(s)	255, 301
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	3 cut(s)	175, 185, 255
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	19, 191
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	107, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 224
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	310
Kpn2I	TCCGGA	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	5 cut(s)	42, 166, 177, 230, 251
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	9 cut(s)	70, 84, 93, 102, 177, 182, 268, 300, 314
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	5 cut(s)	44, 168, 179, 232, 253
MboI	GATC	5 cut(s)	42, 166, 177, 230, 251
MboII	GAAGA	1 cut(s)	105
MflI	RGATCY	3 cut(s)	166, 177, 251
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	2 cut(s)	46, 155
MnlI	CCTC	7 cut(s)	64, 242, 251, 269, 275, 278, 281
MroI	TCCGGA	1 cut(s)	254
MseI	TTAA	1 cut(s)	128
MspI	CCGG	2 cut(s)	255, 301
MspR9I	CCNGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	158, 224
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	5 cut(s)	42, 166, 177, 230, 251
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	2 cut(s)	253, 299
PspN4I	GGNNCC	2 cut(s)	253, 299
PspPI	GGNCC	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	3 cut(s)	166, 177, 251
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	5 cut(s)	42, 166, 177, 230, 251
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	5 cut(s)	106, 134, 196, 201, 352
SfaNI	GCATC	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	46, 155
SsiI	CCGC	2 cut(s)	210, 268
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	1 cut(s)	106
TasI	AATT	2 cut(s)	46, 155
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
XapI	RAATTY	1 cut(s)	155
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.