Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8128650.1

Orthogroup ID

OG0024262

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 541

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8128650.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 350 bp

atgctgatttttgctcaggggggaagcgcttaccctccaaggttggaaaaactgctaactttggggttcatagatgtgaaggatgtgaaatatgtaattaattatgattttccgggatccctggaggattatgttcatcgcattggccgaactggaagagctggggccaaaggaacagcgtacacattctttacagctgctaatgctagatttgcaaaggaactgattagcttacttgaagaagccggacagaaggtcagtcctgatttggcagcaatggggcgtggtgctcctcctcccccttcaggtcagttagtctcaacactagataaaattattgttgacaattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

116

Amino Acids

12.49

Weight (kDa)

7.97

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024262)

Species	Orthologous Gene IDs
malus_domestica	MD14G1172400.v1.1
pyrus_communis	pycom11g03150
rosa_multiflora	Rmu_co8128650.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	111, 124
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	182
AfeI	AGCGCT	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	239
AhdI	GACNNNNNGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	161, 197, 231
AluI	AGCT	3 cut(s)	161, 197, 231
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	111, 124
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	2 cut(s)	145, 165
ApeKI	GCWGC	2 cut(s)	197, 272
AseI	ATTAAT	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	184, 284
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	207, 326
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	198, 273
BlsI	GCNGC	2 cut(s)	199, 274
Bme1390I	CCNGG	2 cut(s)	114, 122
BmeRI	GACNNNNNGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	118, 166
BmrFI	CCNGG	2 cut(s)	114, 122
BpmI	CTGGAG	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	38, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	38, 120
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	282, 285
BseXI	GCAGC	2 cut(s)	184, 284
BseYI	CCCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	147, 167
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	113, 246
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	147, 167
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	147, 167
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	118, 166
BspPI	GGATC	2 cut(s)	111, 124
BspQI	GCTCTTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	38, 120
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 212
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	112, 120
BstV1I	GCAGC	2 cut(s)	184, 284
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	147, 167
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	6 cut(s)	147, 161, 167, 197, 231, 245
CviKI_1	RGCY	6 cut(s)	147, 161, 167, 197, 231, 245
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
DriI	GACNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	151
Eam1105I	GACNNNNNGTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaiI	YATR	4 cut(s)	71, 93, 105, 132
Fnu4HI	GCNGC	2 cut(s)	198, 273
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	198, 273
FspBI	CTAG	2 cut(s)	207, 326
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	198, 273
GsaI	CCCAGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	147, 167
HapII	CCGG	2 cut(s)	113, 246
HhaI	GCGC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaII	CCGG	2 cut(s)	113, 246
Hpy166II	GTNNAC	2 cut(s)	183, 343
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	183, 343
HpyAV	CCTTC	3 cut(s)	73, 247, 312
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 212
HpyF3I	CTNAG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	116
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	9 cut(s)	2, 107, 126, 134, 138, 147, 259, 276, 291
Lsp1109I	GCAGC	2 cut(s)	184, 284
MaeI	CTAG	2 cut(s)	207, 326
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	2 cut(s)	168, 251
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	4 cut(s)	96, 100, 333, 346
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	4 cut(s)	45, 118, 303, 306
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	113, 246
MspR9I	CCNGG	2 cut(s)	114, 122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	203, 212
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	118, 166
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	199, 274
PshBI	ATTAAT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	118, 166
PspPI	GGNCC	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	198, 273
Sau3AI	GATC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	114, 122
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	6 cut(s)	44, 163, 199, 233, 258, 310
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	96, 100, 333, 346
SspMI	CTAG	2 cut(s)	207, 326
StyD4I	CCNGG	2 cut(s)	112, 120
StyI	CCWWGG	1 cut(s)	38
TasI	AATT	4 cut(s)	96, 100, 333, 346
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	2 cut(s)	197, 272
TspDTI	ATGAA	2 cut(s)	58, 125
VspI	ATTAAT	1 cut(s)	99
XspI	CTAG	2 cut(s)	207, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.