Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0024264

Physical Location & Seq

Genomic Coordinates Forward (+)

29233771 .. 29234804

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1204100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCAGTCGGAGCGAGGACCGGTGCGAAATAGCCTTCTTCGACTTGGAGACGACGAGGCCGACCGACCGCACCATCTTGGAATTCGGGTCGATTCTCGTTTGCCCCAGGACGCTGGTGGAGCTCGACAACTACTCCACCCTGGTCCGACCCGCCGACCTCTCCGTCATCAGTTCCCTGCCCGACCGCCGCAACGGCATTACCCGCGCCGCCCTCGTCGACGCCCCTTTTTTTCAGGACATCGCCGACAGGGTCTACGACATTCTCCACGGACGTATATGGGCTGGTCACTACATTCTGAAGTTTGATTGTGAGCGGATTCGGGAGGCTTTCGCGCAGATTGGTCGGCGTGCACCAGAACCGAAAGATACAATCGATTCATGGGAATTATTGAGACAGACGTTCGGAAGGAGAGCTGGTGACATGAAGATGGCCTCCCTTGCAACCTATTTCGGGCTTGGACAGCAGACACACAGGAGTTTGGATGATGTTCGAATGAATCTGGAAGTTCTGAAATGCTGTGCGGCCGTTTTATTCATGGTAATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008408 GO:0009380 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0030312 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:1901360 GO:1902494 GO:1905347 GO:1905348 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

184

Amino Acids

20.91

Weight (kDa)

5.94

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	13 - 171	1.7e-25	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024264)

Species	Orthologous Gene IDs
malus_domestica	MD14G1204000.v1.1 MD14G1204100.v1.1
prunus_persica	Prupe.5G197600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	2 cut(s)	219, 255
AccII	CGCG	2 cut(s)	207, 335
AciI	CCGC	8 cut(s)	70, 153, 187, 190, 205, 210, 316, 524
AcoI	YGGCCR	2 cut(s)	3, 525
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgeI	ACCGGT	1 cut(s)	21
AjnI	CCWGG	2 cut(s)	107, 141
AluBI	AGCT	2 cut(s)	124, 416
AluI	AGCT	2 cut(s)	124, 416
Alw21I	GWGCWC	2 cut(s)	126, 355
Alw26I	GTCTC	2 cut(s)	44, 388
Alw44I	GTGCAC	1 cut(s)	351
AoxI	GGCC	4 cut(s)	3, 59, 432, 525
ApaLI	GTGCAC	1 cut(s)	351
ApoI	RAATTY	1 cut(s)	83
AsiGI	ACCGGT	1 cut(s)	21
AspLEI	GCGC	2 cut(s)	209, 337
AspS9I	GGNCC	2 cut(s)	19, 145
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	2 cut(s)	19, 145
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	126, 355
BccI	CCATC	2 cut(s)	83, 424
BceAI	ACGGC	2 cut(s)	211, 512
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	109, 143
BcoDI	GTCTC	2 cut(s)	44, 388
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	3 cut(s)	190, 210, 525
BlsI	GCNGC	3 cut(s)	191, 211, 526
Bme1390I	CCNGG	2 cut(s)	109, 143
Bme18I	GGWCC	2 cut(s)	19, 145
BmgT120I	GGNCC	2 cut(s)	19, 145
BmrFI	CCNGG	2 cut(s)	109, 143
Bpu14I	TTCGAA	1 cut(s)	493
Bsa29I	ATCGAT	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	107, 141, 268
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	109, 143
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	107, 141, 268
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	6
BseSI	GKGCMC	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	525
Bsh1236I	CGCG	2 cut(s)	207, 335
Bsh1285I	CGRYCG	4 cut(s)	66, 70, 187, 528
BshFI	GGCC	4 cut(s)	5, 61, 434, 527
BshTI	ACCGGT	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	4 cut(s)	66, 70, 187, 528
BsiHKAI	GWGCWC	2 cut(s)	126, 355
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	44, 388
BsmBI	CGTCTC	1 cut(s)	44
BsnI	GGCC	4 cut(s)	5, 61, 434, 527
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	126, 355
BspACI	CCGC	8 cut(s)	70, 153, 187, 190, 205, 210, 316, 524
BspANI	GGCC	4 cut(s)	5, 61, 434, 527
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	2 cut(s)	207, 335
BspT104I	TTCGAA	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	107, 141, 268
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	109, 143
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	2 cut(s)	207, 335
BstHHI	GCGC	2 cut(s)	209, 337
BstMAI	GTCTC	2 cut(s)	44, 388
BstMCI	CGRYCG	4 cut(s)	66, 70, 187, 528
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 195, 204, 440, 463
BstNI	CCWGG	2 cut(s)	109, 143
BstSCI	CCNGG	2 cut(s)	107, 141
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	2 cut(s)	207, 335
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstZI	CGGCCG	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	5, 61, 434, 527
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	209, 337
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	19, 145
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	2 cut(s)	121, 230
CspAI	ACCGGT	1 cut(s)	21
CviAII	CATG	3 cut(s)	381, 424, 538
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	3, 525
EagI	CGGCCG	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	19, 145
Eco52I	CGGCCG	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	107, 141
EcoT38I	GRGCYC	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	384, 427, 541
FaiI	YATR	6 cut(s)	278, 280, 382, 425, 539, 550
FatI	CATG	3 cut(s)	380, 423, 537
FauI	CCCGC	2 cut(s)	160, 212
FblI	GTMKAC	2 cut(s)	219, 255
Fnu4HI	GCNGC	3 cut(s)	190, 210, 525
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	190, 210, 525
GlaI	GCGC	2 cut(s)	208, 336
GluI	GCNGC	3 cut(s)	190, 210, 525
HaeIII	GGCC	4 cut(s)	5, 61, 434, 527
HapII	CCGG	1 cut(s)	22
HgaI	GACGC	2 cut(s)	121, 230
HhaI	GCGC	2 cut(s)	209, 337
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	384, 427, 541
Hin6I	GCGC	2 cut(s)	207, 335
HinP1I	GCGC	2 cut(s)	207, 335
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	94, 319, 377, 499
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	220, 256, 353
Hpy188I	TCNGA	5 cut(s)	12, 149, 300, 407, 513
Hpy188III	TCNNGA	3 cut(s)	236, 323, 503
Hpy8I	GTNNAC	3 cut(s)	220, 256, 353
Hpy99I	CGWCG	3 cut(s)	58, 221, 224
HpyAV	CCTTC	2 cut(s)	46, 402
HpyCH4IV	ACGT	2 cut(s)	274, 401
HpyCH4V	TGCA	2 cut(s)	353, 443
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 195, 204, 440, 463
HpySE526I	ACGT	2 cut(s)	274, 401
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	384, 427, 541
HspAI	GCGC	2 cut(s)	207, 335
LmnI	GCTCC	2 cut(s)	12, 121
MaeII	ACGT	2 cut(s)	274, 401
MaeIII	GTNAC	2 cut(s)	287, 419
MbiI	CCGCTC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	31, 439
MhlI	GDGCHC	2 cut(s)	126, 355
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	83, 386
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	6 cut(s)	10, 51, 170, 224, 319, 445
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	428, 542
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	109, 143
MvaI	CCWGG	2 cut(s)	109, 143
MvnI	CGCG	2 cut(s)	207, 335
MwoI	GCNNNNNNNGC	5 cut(s)	121, 195, 204, 440, 463
NlaIII	CATG	3 cut(s)	384, 427, 541
NmuCI	GTSAC	2 cut(s)	287, 419
NspV	TTCGAA	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	94, 319, 377, 499
PflFI	GACNNNGTC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	191, 211, 526
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	107, 141
PspGI	CCWGG	2 cut(s)	107, 141
PspPI	GGNCC	2 cut(s)	19, 145
PsyI	GACNNNGTC	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	428, 542
SacI	GAGCTC	1 cut(s)	126
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	3 cut(s)	190, 210, 525
Sau96I	GGNCC	2 cut(s)	19, 145
ScrFI	CCNGG	2 cut(s)	109, 143
SduI	GDGCHC	2 cut(s)	126, 355
SetI	ASST	6 cut(s)	126, 162, 277, 404, 418, 449
SfuI	TTCGAA	1 cut(s)	493
SgrDI	CGTCGACG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	19, 145
SmiMI	CAYNNNNRTG	2 cut(s)	428, 542
Sse9I	AATT	2 cut(s)	83, 386
SsiI	CCGC	8 cut(s)	70, 153, 187, 190, 205, 210, 316, 524
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	107, 141
TaiI	ACGT	2 cut(s)	277, 404
TaqI	TCGA	6 cut(s)	42, 92, 126, 219, 375, 493
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	83, 386
TauI	GCSGC	3 cut(s)	192, 212, 527
TfiI	GAWTC	4 cut(s)	94, 319, 377, 499
TseFI	GTSAC	2 cut(s)	287, 419
Tsp45I	GTSAC	2 cut(s)	287, 419
TspDTI	ATGAA	4 cut(s)	369, 440, 512, 526
TspGWI	ACGGA	2 cut(s)	154, 285
Tth111I	GACNNNGTC	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	2 cut(s)	19, 145
XapI	RAATTY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	219, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.