Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0024296

Physical Location & Seq

Genomic Coordinates Forward (+)

1045233 .. 1046516

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1018200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTTGACAAAATTGATGGGAAGGAGAAGAAGTCCGGCCTTAAGATAAGATCGAAGTTTGTCGAGGCGAATATGGTTGATTCTGAGGATGATGAGCCAATTGGGTCACTGTTGACGTTGAAGAGGCAGACAAACCCTAAGAAGGTTAAGGGTGGCGGCGAAAGGGGCAAGAAGGTTGACGATGAAGAAGATGATTTGGGGTGCCTGGATGATACTTTGGCAAGTTTGAGGAAGAAGTTGAAGGGTCCCAAGAAAGATTATGGGACTGGAACTATGAGGGGAAGGAGTTTTGCTTTGGATAGTGTACAGTCTGCGGAGCGGTACTCTAATGGGCATGTGGACGACGGGGGTTTGGATGGAAAATCGGTGTCAAGGGTTTTAGAGAAAGATCCTGTTATGGGTGATGATGGATCTGATGTGACTATCGGTATAGAGGTAGAAAACAAGCTTAATGGAAAGGGAAAGAGACCCAAGATTTCAGGGTCTCTGGGATTTGGGGAAGGTTCTAATTGCCTTTTGGATCATCATCCGGAAGATTCATTATCAGCATTTTCCCGGAAGTCACAATCTGGTTTGATTATGAATTCTCGTGCCTCTTCAAGTCCTAAAGAGAAGAGTGGTTCTAAGGTTTTGGAGGATGGGTTGAACACCATGCCTTTGGCTGGTTCAAATCCATTGGATTCAGCCTCTGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

233

Amino Acids

24.76

Weight (kDa)

6.02

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024296)

Species	Orthologous Gene IDs
malus_domestica	MD15G1018200.v1.1
pyrus_communis	pycom08g01500 pycom15g01400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	3 cut(s)	156, 314, 319
AclWI	GGATC	3 cut(s)	383, 418, 528
AcsI	RAATTY	1 cut(s)	583
AfaI	GTAC	2 cut(s)	306, 323
AfiI	CCNNNNNNNGG	3 cut(s)	142, 398, 662
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	121, 241, 600, 646, 669
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	448
AluI	AGCT	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	460, 489
AlwI	GGATC	3 cut(s)	383, 418, 528
AlwNI	CAGNNNCTG	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	588
BccI	CCATC	4 cut(s)	11, 350, 401, 632
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	460, 489
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	206, 556
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	203, 246, 247
BmrFI	CCNGG	2 cut(s)	206, 556
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuMI	CCSGG	1 cut(s)	556
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	2 cut(s)	460, 489
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 626, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 398, 662
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	5 cut(s)	94, 214, 361, 526, 643
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	142, 398, 662
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	36, 530, 556
BslFI	GGGAC	2 cut(s)	231, 277
BslI	CCNNNNNNNGG	3 cut(s)	142, 398, 662
BsmAI	GTCTC	2 cut(s)	460, 489
BsmFI	GGGAC	2 cut(s)	231, 277
BsnI	GGCC	1 cut(s)	39
Bso31I	GGTCTC	2 cut(s)	460, 489
Bsp13I	TCCGGA	1 cut(s)	529
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	5 cut(s)	50, 388, 410, 520, 691
BspACI	CCGC	3 cut(s)	156, 314, 319
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	203, 246, 247
BspPI	GGATC	3 cut(s)	383, 418, 528
BspT107I	GGYRCC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	460, 489
BsrBI	CCGCTC	1 cut(s)	319
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	50, 388, 410, 520, 691
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	111, 309
Bst6I	CTCTTC	3 cut(s)	116, 601, 608
BstAFI	CTTAAG	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	84, 138, 624
BstF5I	GGATG	5 cut(s)	94, 214, 361, 526, 643
BstKTI	GATC	5 cut(s)	53, 391, 413, 523, 694
BstMAI	GTCTC	2 cut(s)	460, 489
BstMBI	GATC	5 cut(s)	50, 388, 410, 520, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	204, 554
BstX2I	RGATCY	2 cut(s)	388, 410
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	2 cut(s)	388, 410
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	94, 214, 361, 526, 643
BtsIMutI	CAGTG	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	305, 322
CviAII	CATG	2 cut(s)	335, 652
CviJI	RGCY	5 cut(s)	39, 97, 448, 662, 686
CviKI_1	RGCY	5 cut(s)	39, 97, 448, 662, 686
CviQI	GTAC	2 cut(s)	305, 322
DdeI	CTNAG	3 cut(s)	84, 138, 624
DpnI	GATC	5 cut(s)	52, 390, 412, 522, 693
DpnII	GATC	5 cut(s)	50, 388, 410, 520, 691
Eam1104I	CTCTTC	3 cut(s)	116, 601, 608
EarI	CTCTTC	3 cut(s)	116, 601, 608
Eco31I	GGTCTC	2 cut(s)	460, 489
Eco47I	GGWCC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	338, 655
FaiI	YATR	8 cut(s)	74, 261, 275, 336, 398, 431, 581, 653
FaqI	GGGAC	2 cut(s)	231, 277
FatI	CATG	2 cut(s)	334, 651
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	5 cut(s)	101, 221, 368, 513, 650
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	3 cut(s)	36, 530, 556
Hin1II	CATG	2 cut(s)	338, 655
HincII	GTYRAC	3 cut(s)	7, 114, 178
HindII	GTYRAC	3 cut(s)	7, 114, 178
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	80, 536, 680
HpaII	CCGG	3 cut(s)	36, 530, 556
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	5 cut(s)	7, 114, 178, 305, 340
Hpy188I	TCNGA	3 cut(s)	85, 415, 691
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	5 cut(s)	7, 114, 178, 305, 340
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	6 cut(s)	16, 136, 166, 235, 276, 494
HpyCH4III	ACNGT	2 cut(s)	111, 309
HpyCH4IV	ACGT	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	3 cut(s)	84, 138, 624
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	338, 655
KflI	GGGWCCC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	50, 388, 410, 520, 691
LmnI	GCTCC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	3 cut(s)	105, 418, 561
MalI	GATC	5 cut(s)	52, 390, 412, 522, 693
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	5 cut(s)	50, 388, 410, 520, 691
MboII	GAAGA	8 cut(s)	40, 133, 197, 200, 244, 545, 588, 625
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	2 cut(s)	388, 410
MluCI	AATT	4 cut(s)	12, 99, 508, 583
MnlI	CCTC	9 cut(s)	58, 79, 117, 222, 270, 427, 604, 628, 697
MroI	TCCGGA	1 cut(s)	529
MseI	TTAA	3 cut(s)	42, 147, 450
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	3 cut(s)	36, 530, 556
MspR9I	CCNGG	2 cut(s)	206, 556
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	5 cut(s)	50, 388, 410, 520, 691
NlaIII	CATG	2 cut(s)	338, 655
NlaIV	GGNNCC	3 cut(s)	203, 246, 247
NmuCI	GTSAC	3 cut(s)	105, 418, 561
NspI	RCATGY	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	80, 536, 680
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	203, 246, 247
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	2 cut(s)	388, 410
RsaI	GTAC	2 cut(s)	306, 323
RsaNI	GTAC	2 cut(s)	305, 322
SaqAI	TTAA	3 cut(s)	42, 147, 450
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	5 cut(s)	50, 388, 410, 520, 691
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	206, 556
SetI	ASST	7 cut(s)	119, 147, 177, 438, 450, 505, 630
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	12, 99, 508, 583
SsiI	CCGC	3 cut(s)	156, 314, 319
StyD4I	CCNGG	2 cut(s)	204, 554
TaaI	ACNGT	2 cut(s)	111, 309
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	53, 63
TasI	AATT	4 cut(s)	12, 99, 508, 583
TatI	WGTACW	1 cut(s)	304
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	80, 536, 680
Tru1I	TTAA	3 cut(s)	42, 147, 450
Tru9I	TTAA	3 cut(s)	42, 147, 450
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	3 cut(s)	105, 418, 561
Tsp45I	GTSAC	3 cut(s)	105, 418, 561
TspDTI	ATGAA	3 cut(s)	198, 528, 596
TspRI	CASTG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.