pycom08g01500

Lysine-specific histone

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
1150377 .. 1152903
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01500.1

Sequence Viewer

Length: 2016 bp
ATGTTTGACAAAATGGATGTGGAGGACAAGAAGTCCGGCTTTAAGAAAAGATCGAAATTTCTGGAGTCGAATATGGTTGATTCTGATGATGATGAGCCAATTGGGTCACTGTTGAAGTTAAAGAGGCAGAGAAACCCTAAGAAGGTTAAGCCACGGTCAGAGGGTGGTGGCGAAAGGGGCAACAAGGTTGAGGACGAAGAAGAGTATTTGGGGGGGCTGGATGATACATTGGCAAGTTTGAGGAAGAAGTTGAAGGGCCCTAAGAAAGATTCTGGGACTGGAACTATGAGGGGAAGGAGTTTTGATTTGGATGGTGTACAGTCTTTGGATCAGTCCTCTAATGGGCATGGGGATGACAGGGGATTAGATGCAAAAGCGATGTCAAGAGTTTTAGAGAAAGGCCCTGTCATGGGTGATGATGGATCTGATGTGACTATCGATATAGGGGTAGAAAACAAGCTCAGTGGGAATGGAAAGGGAAAGAGACCCAAGATTTCTAGGTCTCTGAGATTTGGGGAAGGTTCTAATAGCTCTTTGGATCATCATCCGGGAGATTCATTACCAGCATTTTCCTGGAAGTCACAATCTGGTTTGGTAATGAATTCTCGTGCCTCTTCAAGTCCTAAAGAGAAGAGTGGTTCTAAGGTTTTGGAGGAAGGGTTGAACCCTAGTGTGGATGATGTTGCACGAAACACCATGCCTTTATCTGATTCAAATTCATTGGATTCAGCCTCTGATCAGTGTAAGGCAGATGAAAGTCAAAGTTTTGATTACAGATTAAGATTATGTCAAGCCTCTAACCTCCATAGGGAGAATCAAGAGACATTCAATGATAAAAAGCATAAAAGGCCTTACAAAGTCGTTTCAGAAGATCGAGCTCCTGCCTACTCGCATTCAGGATTTGATTCCAAATTGATTAAGAATGAAGCAATAGTCGATCCTTCTGGTTCAAATTTTCAAGAGGGACCATGCAGCTCAGATGAAGTTAATGATGGAGACAGCAAACATTTGACTCAGCAAACGCGAACTTTTGAGGATGGATTGAAGCACTGCTCTATAGGAGGTTCCATTCAGTCCAAGGATGTTTTGGGTAGATGCACCTTAGCCGCAGACTGTGAAACCTCTTCTCCAGCTGGGAAAGGATTTATGCTGCCTCATTATAATCATGATCTTCTGGACAAGTCATGTGAAAATAAGTTGGAGGACAAACATTTGGTGTCCTCGTTACATCTACAACAGAACTCCTTGACATGCCATGTGAAGATTGAGGATGAGCTTGATTCTGACAGATGTCCAAACTTTTCCCAGCGTACTCAACATCAGTTGTCCAACTTTGCCTCAAACACAGTGGGGATGGAAGACACTAACAGAAATTGTAATGGTCTAATTTCTCGCACTAAGAGTCATGGCCTTGCTTCTGGTCCTTTGCAGGAGAAAAATGATGTTCCAATTCATGATCATCTTATCACTTGTGAAGAGGCTGATGAAAATGAGAGTTGCCCAGAAGACACAGTATCTCTACCGGATGTTGAAAACAAAAGCACTAAGCTATCAGCTATCCAACGTGTGGGGCGCAATGCTAGAAAGCGTAGGCATGGAGACATGGCTTATGAGGGGGATGCTGATTGGGAGGTATTGATAAATGATCAAGGTTCGGATGGTGACAATTCATTTAGAACGAGAGTGAAGTTTGATTCCTCTTCAAGTATCGGTACAGAGTCTGAAAGTGGTGAGGCTGCAGCAGTGTCTGCTGGTCTTAAAGCTCACGCAGTTGGTCCTGTTGAGACGATCAAATTCAAGGAGATTTTGAAGCGCAGAGGTGGGGTTCAGGACTATTTGGAATGCAGGAACCAGATCCTTGCTCTGTGGAATAAAGATGTTAGTCGAATTTTGCCTCTCACTGATTGTGGGGTAACAGATACTTCCTGTGTGGATGATTCACCTCGTGCTTCCCTAATTAAGGATATTTATGCATTCCTTGATCTCAGGCTATATAAATATTGGAATTGCTCTTGA

Protein Analysis

672

Amino Acids

73.83

Weight (kDa)

5.66

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIRM PF04433 589 - 661 1.5e-09 SWIRM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024296)

Species Orthologous Gene IDs
malus_domestica MD15G1018200.v1.1
pyrus_communis pycom08g01500 pycom15g01400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AccB7I CCANNNNNTGG 1 cut(s) 1567
AccII CGCG 1 cut(s) 1024
AciI CCGC 1 cut(s) 1107
AclWI GGATC 5 cut(s) 336, 430, 546, 932, 1849
AcsI RAATTY 6 cut(s) 56, 601, 715, 952, 1793, 1887
AdeI CACNNNGTG 1 cut(s) 1946
AfaI GTAC 3 cut(s) 318, 1312, 1714
AfiI CCNNNNNNNGG 8 cut(s) 142, 342, 409, 410, 673, 808, 1567, 1960
AflIII ACRYGT 1 cut(s) 1564
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 572
AluBI AGCT 9 cut(s) 460, 531, 878, 975, 1133, 1276, 1549, 1556, 1763
AluI AGCT 9 cut(s) 460, 531, 878, 975, 1133, 1276, 1549, 1556, 1763
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 6 cut(s) 478, 507, 815, 990, 1593, 1778
AlwI GGATC 5 cut(s) 336, 430, 546, 932, 1849
AlwNI CAGNNNCTG 3 cut(s) 734, 1721, 1748
AoxI GGCC 4 cut(s) 256, 400, 848, 1408
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 4 cut(s) 972, 1150, 1736, 1739
ApoI RAATTY 6 cut(s) 56, 601, 715, 952, 1793, 1887
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspLEI GCGC 2 cut(s) 1575, 1815
AspS9I GGNCC 6 cut(s) 256, 257, 401, 965, 1421, 1775
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 4 cut(s) 425, 1673, 1742, 1932
AvaII GGWCC 3 cut(s) 965, 1421, 1775
BaeGI GKGCMC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 260, 880
BauI CACGAG 2 cut(s) 606, 1944
BbsI GAAGAC 2 cut(s) 1365, 1512
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 4 cut(s) 984, 1137, 1723, 1751
BccI CCATC 6 cut(s) 305, 413, 986, 1031, 1348, 1652
BciT130I CCWGG 1 cut(s) 574
BclI TGATCA 3 cut(s) 736, 1456, 1645
BcnI CCSGG 1 cut(s) 549
BcoDI GTCTC 6 cut(s) 478, 507, 815, 990, 1593, 1778
BfaI CTAG 3 cut(s) 498, 669, 1581
BfmI CTRYAG 2 cut(s) 1056, 1737
BisI GCNGC 5 cut(s) 973, 1107, 1151, 1737, 1740
BlsI GCNGC 5 cut(s) 974, 1108, 1152, 1738, 1741
Bme1390I CCNGG 2 cut(s) 549, 574
Bme18I GGWCC 3 cut(s) 965, 1421, 1775
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgT120I GGNCC 6 cut(s) 256, 257, 401, 965, 1421, 1775
BmiI GGNNCC 4 cut(s) 258, 966, 1066, 1850
BmrFI CCNGG 2 cut(s) 549, 574
BmsI GCATC 3 cut(s) 358, 1085, 1609
BoxI GACNNNNGTC 1 cut(s) 1290
BpiI GAAGAC 2 cut(s) 1365, 1512
BpmI CTGGAG 2 cut(s) 83, 1113
Bpu10I CCTNAGC 1 cut(s) 1102
BpuMI CCSGG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 2 cut(s) 478, 507
BsaJI CCNNGG 2 cut(s) 152, 1077
BsaWI WCCGGW 1 cut(s) 1522
BsaXI ACNNNNNCTCC 4 cut(s) 644, 674, 1111, 1141
Bsc4I CCNNNNNNNGG 8 cut(s) 142, 342, 409, 410, 673, 808, 1567, 1960
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 1582
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 574
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 152, 1077
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 8 cut(s) 142, 342, 409, 410, 673, 808, 1567, 1960
BseMI GCAATG 1 cut(s) 1582
BseMII CTCAG 5 cut(s) 475, 497, 990, 1028, 1999
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 4 cut(s) 984, 1137, 1723, 1751
BseYI CCCAGC 2 cut(s) 1133, 1305
Bsh1236I CGCG 1 cut(s) 1024
BshFI GGCC 4 cut(s) 258, 402, 850, 1410
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 880
BsiSI CCGG 3 cut(s) 36, 548, 1523
BslFI GGGAC 2 cut(s) 289, 978
BslI CCNNNNNNNGG 8 cut(s) 142, 342, 409, 410, 673, 808, 1567, 1960
BsmAI GTCTC 6 cut(s) 478, 507, 815, 990, 1593, 1778
BsmBI CGTCTC 1 cut(s) 1778
BsmFI GGGAC 2 cut(s) 289, 978
BsmI GAATGC 3 cut(s) 892, 1847, 1973
BsnI GGCC 4 cut(s) 258, 402, 850, 1410
Bso31I GGTCTC 2 cut(s) 478, 507
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 260, 880
Bsp1407I TGTACA 1 cut(s) 316
BspACI CCGC 1 cut(s) 1107
BspANI GGCC 4 cut(s) 258, 402, 850, 1410
BspCNI CTCAG 5 cut(s) 474, 498, 989, 1027, 1998
BspDI ATCGAT 1 cut(s) 438
BspFNI CGCG 1 cut(s) 1024
BspHI TCATGA 2 cut(s) 1165, 1453
BspLI GGNNCC 4 cut(s) 258, 966, 1066, 1850
BspMAI CTGCAG 1 cut(s) 1741
BspPI GGATC 5 cut(s) 336, 430, 546, 932, 1849
BspTNI GGTCTC 2 cut(s) 478, 507
BsrDI GCAATG 1 cut(s) 1582
BsrGI TGTACA 1 cut(s) 316
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 152, 1077
BssSI CACGAG 2 cut(s) 606, 1944
BssT1I CCWWGG 1 cut(s) 1077
Bst2BI CACGAG 2 cut(s) 606, 1944
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 6 cut(s) 111, 156, 321, 1115, 1348, 1513
Bst6I CTCTTC 6 cut(s) 195, 619, 626, 1129, 1470, 1705
BstAPI GCANNNNNTGC 1 cut(s) 1748
BstAUI TGTACA 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 1958
BstFNI CGCG 1 cut(s) 1024
BstHHI GCGC 2 cut(s) 1575, 1815
BstMAI GTCTC 6 cut(s) 478, 507, 815, 990, 1593, 1778
BstMWI GCNNNNNNNGC 3 cut(s) 177, 847, 1748
BstNI CCWGG 1 cut(s) 574
BstNSI RCATGY 1 cut(s) 1254
BstPAI GACNNNNGTC 1 cut(s) 1290
BstSCI CCNGG 2 cut(s) 547, 572
BstSFI CTRYAG 2 cut(s) 1056, 1737
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 1024
BstV1I GCAGC 4 cut(s) 984, 1137, 1723, 1751
BstV2I GAAGAC 2 cut(s) 1365, 1512
BstX2I RGATCY 2 cut(s) 422, 1854
BstYI RGATCY 2 cut(s) 422, 1854
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 4 cut(s) 258, 402, 850, 1410
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 392
BtsI GCAGTG 2 cut(s) 1048, 1749
BtsIMutI CAGTG 7 cut(s) 107, 469, 746, 1048, 1353, 1749, 1899
CaiI CAGNNNCTG 3 cut(s) 734, 1721, 1748
CciI TCATGA 2 cut(s) 1165, 1453
CfoI GCGC 2 cut(s) 1575, 1815
Cfr13I GGNCC 6 cut(s) 256, 257, 401, 965, 1421, 1775
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 3 cut(s) 317, 1311, 1713
CspCI CAANNNNNGTGG 4 cut(s) 445, 480, 1329, 1364
CviQI GTAC 3 cut(s) 317, 1311, 1713
DraIII CACNNNGTG 1 cut(s) 1946
DriI GACNNNNNGTC 1 cut(s) 31
Eam1104I CTCTTC 6 cut(s) 195, 619, 626, 1129, 1470, 1705
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 6 cut(s) 195, 619, 626, 1129, 1470, 1705
Ecl136II GAGCTC 1 cut(s) 878
Eco130I CCWWGG 1 cut(s) 1077
Eco147I AGGCCT 1 cut(s) 850
Eco24I GRGCYC 2 cut(s) 260, 880
Eco31I GGTCTC 2 cut(s) 478, 507
Eco47I GGWCC 3 cut(s) 965, 1421, 1775
Eco53kI GAGCTC 1 cut(s) 878
EcoICRI GAGCTC 1 cut(s) 878
EcoNI CCTNNNNNAGG 1 cut(s) 1958
EcoO109I RGGNCCY 3 cut(s) 256, 257, 401
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 1077
EcoT22I ATGCAT 1 cut(s) 1975
EcoT38I GRGCYC 2 cut(s) 260, 880
ErhI CCWWGG 1 cut(s) 1077
Esp3I CGTCTC 1 cut(s) 1778
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 2 cut(s) 289, 978
FbaI TGATCA 3 cut(s) 736, 1456, 1645
Fnu4HI GCNGC 5 cut(s) 973, 1107, 1151, 1737, 1740
FriOI GRGCYC 2 cut(s) 260, 880
Fsp4HI GCNGC 5 cut(s) 973, 1107, 1151, 1737, 1740
FspBI CTAG 3 cut(s) 498, 669, 1581
GlaI GCGC 2 cut(s) 1574, 1814
GluI GCNGC 5 cut(s) 973, 1107, 1151, 1737, 1740
GsaI CCCAGC 2 cut(s) 1137, 1309
GsuI CTGGAG 2 cut(s) 83, 1113
HaeIII GGCC 4 cut(s) 258, 402, 850, 1410
HapII CCGG 3 cut(s) 36, 548, 1523
HhaI GCGC 2 cut(s) 1575, 1815
Hin6I GCGC 2 cut(s) 1573, 1813
HinP1I GCGC 2 cut(s) 1573, 1813
HpaII CCGG 3 cut(s) 36, 548, 1523
HphI GGTGA 4 cut(s) 425, 1673, 1742, 1932
Hpy166II GTNNAC 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 6 cut(s) 136, 247, 288, 512, 650, 951
HpyCH4III ACNGT 6 cut(s) 111, 156, 321, 1115, 1348, 1513
HpyCH4IV ACGT 1 cut(s) 1564
HpyCH4V TGCA 8 cut(s) 371, 686, 972, 1098, 1429, 1739, 1845, 1973
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 847, 1748
HpySE526I ACGT 1 cut(s) 1564
HspAI GCGC 2 cut(s) 1573, 1813
Ksp22I TGATCA 3 cut(s) 736, 1456, 1645
LmnI GCTCC 1 cut(s) 883
Lsp1109I GCAGC 4 cut(s) 984, 1137, 1723, 1751
LweI GCATC 3 cut(s) 358, 1085, 1609
MaeI CTAG 3 cut(s) 498, 669, 1581
MaeII ACGT 1 cut(s) 1564
MaeIII GTNAC 6 cut(s) 105, 430, 579, 1224, 1661, 1912
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 2 cut(s) 422, 1854
MhlI GDGCHC 2 cut(s) 260, 880
MlyI GAGTC 4 cut(s) 74, 1006, 1411, 1727
MmeI TCCRAC 3 cut(s) 1179, 1353, 1585
Mph1103I ATGCAT 1 cut(s) 1975
MseI TTAA 8 cut(s) 42, 119, 147, 779, 918, 987, 1758, 1959
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 1133
MspI CCGG 3 cut(s) 36, 548, 1523
MspR9I CCNGG 2 cut(s) 549, 574
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 3 cut(s) 892, 1847, 1973
MvaI CCWGG 1 cut(s) 574
MvnI CGCG 1 cut(s) 1024
MwoI GCNNNNNNNGC 3 cut(s) 177, 847, 1748
NciI CCSGG 1 cut(s) 549
NlaIV GGNNCC 4 cut(s) 258, 966, 1066, 1850
NmuCI GTSAC 4 cut(s) 105, 430, 579, 1661
NsiI ATGCAT 1 cut(s) 1975
NspI RCATGY 1 cut(s) 1254
PagI TCATGA 2 cut(s) 1165, 1453
PceI AGGCCT 1 cut(s) 850
PctI GAATGC 3 cut(s) 892, 1847, 1973
PflMI CCANNNNNTGG 1 cut(s) 1567
PfoI TCCNGGA 2 cut(s) 547, 572
PkrI GCNGC 5 cut(s) 974, 1108, 1152, 1738, 1741
PleI GAGTC 4 cut(s) 73, 1006, 1410, 1726
PpsI GAGTC 4 cut(s) 73, 1006, 1410, 1726
PshAI GACNNNNGTC 1 cut(s) 1290
PsiI TTATAA 1 cut(s) 1161
Psp124BI GAGCTC 1 cut(s) 880
Psp6I CCWGG 1 cut(s) 572
PspFI CCCAGC 2 cut(s) 1133, 1305
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 4 cut(s) 258, 966, 1066, 1850
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 6 cut(s) 256, 257, 401, 965, 1421, 1775
PstI CTGCAG 1 cut(s) 1741
PstNI CAGNNNCTG 3 cut(s) 734, 1721, 1748
PsuI RGATCY 2 cut(s) 422, 1854
PvuII CAGCTG 1 cut(s) 1133
RsaI GTAC 3 cut(s) 318, 1312, 1714
RsaNI GTAC 3 cut(s) 317, 1311, 1713
RseI CAYNNNNRTG 1 cut(s) 351
SacI GAGCTC 1 cut(s) 880
SaqAI TTAA 8 cut(s) 42, 119, 147, 779, 918, 987, 1758, 1959
SatI GCNGC 5 cut(s) 973, 1107, 1151, 1737, 1740
Sau96I GGNCC 6 cut(s) 256, 257, 401, 965, 1421, 1775
SchI GAGTC 4 cut(s) 74, 1006, 1411, 1727
ScrFI CCNGG 2 cut(s) 549, 574
SduI GDGCHC 2 cut(s) 260, 880
SfaNI GCATC 3 cut(s) 358, 1085, 1609
SfcI CTRYAG 2 cut(s) 1056, 1737
SinI GGWCC 3 cut(s) 965, 1421, 1775
SmiMI CAYNNNNRTG 1 cut(s) 351
SseBI AGGCCT 1 cut(s) 850
SsiI CCGC 1 cut(s) 1107
SspI AATATT 1 cut(s) 2000
SspMI CTAG 3 cut(s) 498, 669, 1581
SstI GAGCTC 1 cut(s) 880
StuI AGGCCT 1 cut(s) 850
StyD4I CCNGG 2 cut(s) 547, 572
StyI CCWWGG 1 cut(s) 1077
TaaI ACNGT 6 cut(s) 111, 156, 321, 1115, 1348, 1513
TaiI ACGT 1 cut(s) 1567
TaqI TCGA 6 cut(s) 53, 68, 438, 874, 936, 1885
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 1109
Tru1I TTAA 8 cut(s) 42, 119, 147, 779, 918, 987, 1758, 1959
Tru9I TTAA 8 cut(s) 42, 119, 147, 779, 918, 987, 1758, 1959
TscAI CASTG 7 cut(s) 114, 469, 746, 1055, 1353, 1749, 1906
TseFI GTSAC 4 cut(s) 105, 430, 579, 1661
TseI GCWGC 4 cut(s) 972, 1150, 1736, 1739
Tsp45I GTSAC 4 cut(s) 105, 430, 579, 1661
TspDTI ATGAA 9 cut(s) 546, 614, 708, 768, 939, 996, 1442, 1500, 1659
TspRI CASTG 7 cut(s) 114, 469, 746, 1055, 1353, 1749, 1906
Van91I CCANNNNNTGG 1 cut(s) 1567
VpaK11BI GGWCC 3 cut(s) 965, 1421, 1775
XagI CCTNNNNNAGG 1 cut(s) 1958
XapI RAATTY 6 cut(s) 56, 601, 715, 952, 1793, 1887
XceI RCATGY 1 cut(s) 1254
XcmI CCANNNNNNNNNTGG 2 cut(s) 570, 1084
XspI CTAG 3 cut(s) 498, 669, 1581
Zsp2I ATGCAT 1 cut(s) 1975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.