Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028424

Physical Location & Seq

Genomic Coordinates Forward (+)

2493330 .. 2494091

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1035300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTACTGTGTTTTATTTGGAATTGTTGCTGCTGTTGGGATCACATTCATTCAGTTTGCAAATAATAATTCCTTGAGAAACATCTATGTTTTGGGTCTTTCCCTGTTTCTTGGGATATCAATACCTCAATATTTTGTCTCGAACTCCAGCCCGAATGGTGTCGGGCCAGTTAAAACAGACGGTGGATGGTTTGATGACATATTGAACACAATCTTCTCATCGAGCCCGACAATGGCGATAATCGTGGGGACGCTGCTGGATAACACGCTTGACGCGAAGTATGCGGTTGACAACAGAGGACTTGCATGGTGGAGGCCATTCCAGAGCAGGAAAGGAGATGTTAGAAATGAAGAGTTTTATAGTCTACCTGTTAGGATACGGGAGTACATCCCTACCAGATTTCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

137

Amino Acids

15.3

Weight (kDa)

7.83

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028424)

Species	Orthologous Gene IDs
malus_domestica	MD15G1035300.v1.1
pyrus_communis	pycom08g03400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	5, 386
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	164, 314
ApeKI	GCWGC	2 cut(s)	29, 253
AspS9I	GGNCC	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	16, 240
BccI	CCATC	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	369
BcoDI	GTCTC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	2 cut(s)	30, 254
BlsI	GCNGC	2 cut(s)	31, 255
BmgT120I	GGNCC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	191, 387
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	16, 240
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	166, 316
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	166, 316
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	166, 316
BspFNI	CGCG	1 cut(s)	275
BspPI	GGATC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	8, 182
Bst6I	CTCTTC	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	191, 387
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	16, 240
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	166, 316
BtsCI	GGATG	2 cut(s)	191, 387
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	2 cut(s)	259, 281
Csp6I	GTAC	2 cut(s)	4, 385
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	4 cut(s)	150, 166, 225, 316
CviKI_1	RGCY	4 cut(s)	150, 166, 225, 316
CviQI	GTAC	2 cut(s)	4, 385
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	309
FaiI	YATR	5 cut(s)	87, 200, 282, 307, 360
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	30, 254
FokI	GGATG	2 cut(s)	198, 374
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	30, 254
GluI	GCNGC	2 cut(s)	30, 254
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	166, 316
HgaI	GACGC	2 cut(s)	259, 281
Hin1II	CATG	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	289, 365
Hpy188III	TCNNGA	2 cut(s)	139, 322
Hpy8I	GTNNAC	2 cut(s)	289, 365
HpyCH4III	ACNGT	2 cut(s)	8, 182
HpyCH4V	TGCA	2 cut(s)	59, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	39
LpnPI	CCDG	7 cut(s)	116, 160, 180, 242, 313, 335, 381
Lsp1109I	GCAGC	2 cut(s)	16, 240
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	205, 362
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	21, 67
MnlI	CCTC	3 cut(s)	135, 290, 306
MseI	TTAA	2 cut(s)	171, 409
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	31, 255
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	5, 386
RsaNI	GTAC	2 cut(s)	4, 385
SaqAI	TTAA	2 cut(s)	171, 409
SatI	GCNGC	2 cut(s)	30, 254
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	2 cut(s)	127, 370
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	21, 67
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	8, 182
TaqI	TCGA	2 cut(s)	140, 221
TasI	AATT	2 cut(s)	21, 67
TatI	WGTACW	2 cut(s)	3, 384
Tru1I	TTAA	2 cut(s)	171, 409
Tru9I	TTAA	2 cut(s)	171, 409
TseI	GCWGC	2 cut(s)	29, 253
TspDTI	ATGAA	2 cut(s)	37, 363
XmiI	GTMKAC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.