Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0028424

Physical Location & Seq

Genomic Coordinates Forward (+)

2638897 .. 2641230

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATTGGTTTAAATCAGCACGAAAGTTAACTTACAATGATTGTGAGACCACAAAACCTTGTGAGAACCGGATTTTACTCCAACAGTGTAGTGAGCCAGAGTATTGGCTTGCGGTGCAGATTTCAACCACTTTCATGTTCTTCTTCTCTATATTTGGTTCGTTCTCTCCTTCCGTTAGACATGTCATGACTCATGCCTGGGTTTACTGCTTTGTGTTTGACAGTGTTAAGTTGCGTCTTTCAGGGAAGTTTGGAGCCTTTTTTGCATCAATTCCTTTGCCGATATTTGCTGCCATGTACTGTGTTTTATTTGGAATCGTCGCTGCTGTTGGTATCACATTCATTCAGTTTGCAAATAATAATTCATTGAGAAACATCTATGTTTTGGGTCTATCCCTGTTTCTTGGGATCTCGATACCTCAATATTTTGTCTCGAACACCACCCCGAATGGTGTCGGGCCAGTCAAAACGGATGGCATATGGTTTGATGACATACTGAACACGATCTTCTCTTCGAGCCCAACAGTGGCGACGATCGTGGGCATGCTGCTGGATAACACGCTTCACGCCAGGCATGCGGCCAACGACAGAGGACTTGCATGGTGGAGACCCTTCCGGAGCAGGAAAGGAGATGCTAGAAATGAGGAGTTTTATAGTCTACCTGTTAGGATACGGGAGTACATACCTACCAGATTTCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

235

Amino Acids

26.73

Weight (kDa)

9.16

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028424)

Species	Orthologous Gene IDs
malus_domestica	MD15G1035300.v1.1
pyrus_communis	pycom08g03400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	658
AccIII	TCCGGA	1 cut(s)	615
AciI	CCGC	2 cut(s)	113, 578
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	579
AfaI	GTAC	2 cut(s)	299, 680
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	197, 569
Alw26I	GTCTC	3 cut(s)	41, 436, 601
AlwI	GGATC	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	615
AoxI	GGCC	2 cut(s)	458, 579
ApeKI	GCWGC	3 cut(s)	290, 323, 547
AspS9I	GGNCC	1 cut(s)	458
BaeI	ACNNNNGTAYC	2 cut(s)	662, 695
BanII	GRGCYC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	277, 310, 534
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	199, 571
BciVI	GTATCC	1 cut(s)	663
BcoDI	GTCTC	3 cut(s)	41, 436, 601
BfaI	CTAG	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	663
BisI	GCNGC	4 cut(s)	291, 324, 548, 579
BlsI	GCNGC	4 cut(s)	292, 325, 549, 580
Bme1390I	CCNGG	2 cut(s)	199, 571
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	199, 571
BmsI	GCATC	2 cut(s)	275, 622
BsaI	GGTCTC	2 cut(s)	41, 601
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	2 cut(s)	69, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	461
BseAI	TCCGGA	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	199, 571
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	277, 310, 534
BsgI	GTGCAG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	460, 581
BsiEI	CGRYCG	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	70, 616
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	3 cut(s)	41, 436, 601
BsnI	GGCC	2 cut(s)	460, 581
Bso31I	GGTCTC	2 cut(s)	41, 601
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp13I	TCCGGA	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	408, 504, 534
BspACI	CCGC	2 cut(s)	113, 578
BspANI	GGCC	2 cut(s)	460, 581
BspEI	TCCGGA	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	416
BspTNI	GGTCTC	2 cut(s)	41, 601
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	408, 504, 534
Bst2UI	CCWGG	2 cut(s)	199, 571
Bst4CI	ACNGT	4 cut(s)	87, 224, 302, 526
Bst6I	CTCTTC	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	111, 545, 576
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	3 cut(s)	411, 507, 537
BstMAI	GTCTC	3 cut(s)	41, 436, 601
BstMBI	GATC	3 cut(s)	408, 504, 534
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 263, 575
BstNI	CCWGG	2 cut(s)	199, 571
BstNSI	RCATGY	3 cut(s)	185, 547, 578
BstSCI	CCNGG	2 cut(s)	197, 569
BstV1I	GCAGC	3 cut(s)	277, 310, 534
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	460, 581
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	92, 229, 531
Cac8I	GCNNGC	3 cut(s)	111, 545, 576
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	298, 679
CviAII	CATG	8 cut(s)	136, 182, 187, 194, 295, 544, 575, 600
CviJI	RGCY	6 cut(s)	97, 109, 257, 460, 519, 581
CviKI_1	RGCY	6 cut(s)	97, 109, 257, 460, 519, 581
CviQI	GTAC	2 cut(s)	298, 679
DpnI	GATC	3 cut(s)	410, 506, 536
DpnII	GATC	3 cut(s)	408, 504, 534
DraI	TTTAAA	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	2 cut(s)	41, 601
EcoRII	CCWGG	2 cut(s)	197, 569
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	8 cut(s)	139, 185, 190, 197, 298, 547, 578, 603
FatI	CATG	8 cut(s)	135, 181, 186, 193, 294, 543, 574, 599
FauNDI	CATATG	1 cut(s)	479
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	291, 324, 548, 579
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	4 cut(s)	291, 324, 548, 579
FspBI	CTAG	1 cut(s)	636
GluI	GCNGC	4 cut(s)	291, 324, 548, 579
HaeIII	GGCC	2 cut(s)	460, 581
HapII	CCGG	2 cut(s)	70, 616
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	8 cut(s)	139, 185, 190, 197, 298, 547, 578, 603
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	190, 315
HpaI	GTTAAC	1 cut(s)	30
HpaII	CCGG	2 cut(s)	70, 616
Hpy166II	GTNNAC	3 cut(s)	30, 205, 659
Hpy188III	TCNNGA	4 cut(s)	187, 412, 433, 616
Hpy8I	GTNNAC	3 cut(s)	30, 205, 659
Hpy99I	CGWCG	2 cut(s)	323, 535
HpyAV	CCTTC	2 cut(s)	180, 622
HpyCH4III	ACNGT	4 cut(s)	87, 224, 302, 526
HpyCH4V	TGCA	4 cut(s)	118, 266, 353, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 263, 575
Hsp92II	CATG	8 cut(s)	139, 185, 190, 197, 298, 547, 578, 603
Kpn2I	TCCGGA	1 cut(s)	615
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	408, 504, 534
LmnI	GCTCC	2 cut(s)	254, 618
Lsp1109I	GCAGC	3 cut(s)	277, 310, 534
LweI	GCATC	2 cut(s)	275, 622
MaeI	CTAG	1 cut(s)	636
MalI	GATC	3 cut(s)	410, 506, 536
MboI	GATC	3 cut(s)	408, 504, 534
MboII	GAAGA	4 cut(s)	133, 136, 499, 504
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	3 cut(s)	4, 270, 361
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	429, 584, 637
MroI	TCCGGA	1 cut(s)	615
MseI	TTAA	4 cut(s)	12, 29, 228, 703
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	2 cut(s)	70, 616
MspR9I	CCNGG	2 cut(s)	199, 571
MvaI	CCWGG	2 cut(s)	199, 571
MwoI	GCNNNNNNNGC	3 cut(s)	115, 263, 575
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	3 cut(s)	408, 504, 534
NlaIII	CATG	8 cut(s)	139, 185, 190, 197, 298, 547, 578, 603
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	3 cut(s)	185, 547, 578
PaeI	GCATGC	2 cut(s)	547, 578
PagI	TCATGA	1 cut(s)	186
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	4 cut(s)	292, 325, 549, 580
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	197, 569
PspGI	CCWGG	2 cut(s)	197, 569
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	408
PvuI	CGATCG	1 cut(s)	537
RsaI	GTAC	2 cut(s)	299, 680
RsaNI	GTAC	2 cut(s)	298, 679
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	12, 29, 228, 703
SatI	GCNGC	4 cut(s)	291, 324, 548, 579
Sau3AI	GATC	3 cut(s)	408, 504, 534
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	199, 571
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	4 cut(s)	61, 421, 664, 688
SfaNI	GCATC	2 cut(s)	275, 622
SmiMI	CAYNNNNRTG	1 cut(s)	134
SphI	GCATGC	2 cut(s)	547, 578
Sse9I	AATT	3 cut(s)	4, 270, 361
SsiI	CCGC	2 cut(s)	113, 578
SspI	AATATT	1 cut(s)	425
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	197, 569
TaaI	ACNGT	4 cut(s)	87, 224, 302, 526
TaqI	TCGA	3 cut(s)	413, 434, 515
TasI	AATT	3 cut(s)	4, 270, 361
TatI	WGTACW	2 cut(s)	297, 678
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	4 cut(s)	12, 29, 228, 703
Tru9I	TTAA	4 cut(s)	12, 29, 228, 703
TscAI	CASTG	3 cut(s)	92, 229, 531
TseI	GCWGC	3 cut(s)	290, 323, 547
TspDTI	ATGAA	4 cut(s)	17, 124, 331, 354
TspGWI	ACGGA	2 cut(s)	163, 485
TspRI	CASTG	3 cut(s)	92, 229, 531
XceI	RCATGY	3 cut(s)	185, 547, 578
XmiI	GTMKAC	1 cut(s)	658
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.