Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028367

Physical Location & Seq

Genomic Coordinates Reverse (-)

2740344 .. 2741773

Gene Structure 1430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1039000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTGTTCAGCGTCTTGGTATTAGGAAGTTTTCCGCAGAGGTTGAACAGTCTATTCTTGAAGACTTGAGAAACCGTGTGCAATTGAGTAATGCTGCGCTGCCATCTGTCAGCTTTTATACATTCATCAACACGCACAATGGTTTAAACTGTTCGTCTATATCCCATGATGGATCCATGGTTGCTGGGGGATTTTCAGACTCGTCGCTGAAGGTATGGGATATGGCAAAGATTGGGCAACAAGGCCTTGATTCTTTGCAGGTTGAGAATGGCACCACCACTTCAAGTGAGCAAGTTCTGTCAAATGGTGGGAAAAAACCATATACTTTGTTTCAGGGTCATTCAGGGCCAGTTTATTCAGCTACTTTCAATCCCCTTGGGGATTTTATTCTTTCCTCTTCGGCAGACTCAACTGTTCGGTTGTGGAGCACAAAACTAAATGCAAATCTTGTTTGCTACAAGGGTCATAATTACCCAGTATGGGATGTTCAGTTTAGCCCTGTAGGTCCTTATTTTGCCAGTGCTTCCCATGATCGAACAGCAAGGATATGGTCTATGGACAGAATTCAGCCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

193

Amino Acids

21.09

Weight (kDa)

6.95

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	41 - 188	6.7e-17	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	42 - 189	4.8e-21	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	45 - 187	1.8e-11	CAF1B/HIR1 beta-propeller domain
WD40_Gbeta	PF25391	91 - 186	1.6e-07	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	98 - 188	1.7e-16	THOC3 beta-propeller domain
WD40_Prp19	PF24814	101 - 187	5.4e-13	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	105 - 145	7.8e-07	WDHD1 first WD40 domain
WD40	PF00400	106 - 143	1.3e-09	WD domain, G-beta repeat
EIF3I	PF24805	110 - 187	6.7e-11	EIF3I
Beta-prop_WDR36-Utp21_2nd	PF25168	110 - 180	7.8e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	111 - 186	2e-08	WDR3 second beta-propeller domain
WD40	PF00400	152 - 185	1.4e-09	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0028367)

Species	Orthologous Gene IDs
malus_domestica	MD15G1039000.v1.1
pyrus_communis	pycom15g03660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	168, 181
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	47, 62, 285, 370
AluBI	AGCT	2 cut(s)	114, 362
AluI	AGCT	2 cut(s)	114, 362
Alw21I	GWGCWC	1 cut(s)	431
AlwI	GGATC	2 cut(s)	168, 181
AoxI	GGCC	2 cut(s)	244, 347
ApeKI	GCWGC	2 cut(s)	95, 100
ApoI	RAATTY	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	2 cut(s)	347, 506
AvaII	GGWCC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	82, 87
BccI	CCATC	2 cut(s)	112, 164
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	96, 101
BlsI	GCNGC	2 cut(s)	97, 102
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	347, 506
BmiI	GGNNCC	2 cut(s)	175, 274
BmrI	ACTGGG	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	177, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	3 cut(s)	350, 476, 519
BseDI	CCNNGG	2 cut(s)	177, 376
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	3 cut(s)	350, 476, 519
BseXI	GCAGC	2 cut(s)	82, 87
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	2 cut(s)	246, 349
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	481
BsnI	GGCC	2 cut(s)	246, 349
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	2 cut(s)	173, 532
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	246, 349
BspLI	GGNNCC	2 cut(s)	175, 274
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	350, 476, 519
BssECI	CCNNGG	2 cut(s)	177, 376
BssMI	GATC	2 cut(s)	173, 532
BssT1I	CCWWGG	2 cut(s)	177, 376
Bst4CI	ACNGT	4 cut(s)	51, 77, 152, 415
Bst6I	CTCTTC	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	176, 535
BstMBI	GATC	2 cut(s)	173, 532
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	82, 87
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	246, 349
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	250
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	347, 506
CseI	GACGC	1 cut(s)	2
CviAII	CATG	4 cut(s)	167, 178, 530, 573
CviJI	RGCY	6 cut(s)	114, 246, 349, 362, 498, 571
CviKI_1	RGCY	6 cut(s)	114, 246, 349, 362, 498, 571
DpnI	GATC	2 cut(s)	175, 534
DpnII	GATC	2 cut(s)	173, 532
DraI	TTTAAA	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	177, 376
Eco147I	AGGCCT	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	177, 376
ErhI	CCWWGG	2 cut(s)	177, 376
FaeI	CATG	4 cut(s)	170, 181, 533, 576
FatI	CATG	4 cut(s)	166, 177, 529, 572
Fnu4HI	GCNGC	2 cut(s)	96, 101
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	2 cut(s)	96, 101
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	96, 101
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	246, 349
HgaI	GACGC	1 cut(s)	2
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	4 cut(s)	170, 181, 533, 576
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	3 cut(s)	200, 251, 407
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	4 cut(s)	51, 77, 152, 415
HpyCH4V	TGCA	3 cut(s)	82, 259, 443
Hsp92II	CATG	4 cut(s)	170, 181, 533, 576
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	173, 532
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	8 cut(s)	171, 245, 320, 330, 363, 489, 513, 532
Lsp1109I	GCAGC	2 cut(s)	82, 87
MalI	GATC	2 cut(s)	175, 534
MboI	GATC	2 cut(s)	173, 532
MboII	GAAGA	2 cut(s)	74, 390
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	3 cut(s)	83, 469, 564
MlyI	GAGTC	2 cut(s)	194, 401
MnlI	CCTC	2 cut(s)	34, 406
MseI	TTAA	1 cut(s)	146
MssI	GTTTAAAC	1 cut(s)	147
MunI	CAATTG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	173, 532
NlaIII	CATG	4 cut(s)	170, 181, 533, 576
NlaIV	GGNNCC	2 cut(s)	175, 274
PceI	AGGCCT	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	97, 102
PleI	GAGTC	2 cut(s)	194, 401
PmeI	GTTTAAAC	1 cut(s)	147
PpsI	GAGTC	2 cut(s)	194, 401
PpuMI	RGGWCCY	1 cut(s)	506
Psp5II	RGGWCCY	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	175, 274
PspPI	GGNCC	2 cut(s)	347, 506
PspPPI	RGGWCCY	1 cut(s)	506
PsrI	GAACNNNNNNTAC	2 cut(s)	471, 503
PsuI	RGATCY	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	96, 101
Sau3AI	GATC	2 cut(s)	173, 532
Sau96I	GGNCC	2 cut(s)	347, 506
SchI	GAGTC	2 cut(s)	194, 401
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	6 cut(s)	45, 116, 216, 264, 364, 508
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	3 cut(s)	83, 469, 564
SseBI	AGGCCT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	177, 376
TaaI	ACNGT	4 cut(s)	51, 77, 152, 415
TaqI	TCGA	1 cut(s)	535
TasI	AATT	3 cut(s)	83, 469, 564
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	95, 100
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.