Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028367

Physical Location & Seq

Genomic Coordinates Reverse (-)

2224784 .. 2226075

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGAATAAGAAAAAAATTAAGTGAAGGAGCTAAACAGGGGGCTTCGAACAAAAAGTTGAAAAAGGACAAGGCTGCTGGTGCAGCGAAAAGCGCACGCCCTGAGGCAACCCCTGTAACTGCAGTACCAAGAGTCAAACCAGAGCTTACTTTGCCAGTAATTCCCACAGAGGTTGAACATTCTATTCTTGAAGACTTGAGAAACCGTGTGCAATTGAGTAGTGCTGCGCTGCCATCTGTCAGCTTTTATACATTCATCAACACGCACAATGGGATAAACTGTTCGTCTATATCCCATGATGGATCCATGGTTGCTGGTGGATTTTCAGACTCGTCGCCGAAGGTATGGGATATGGCAAAGATTGGGCAACAAAGCCTTGATTCAGCTTTGCAGGTTGAGAATGGTACCACCACTTCAAGTGAACAAGTTCTGTCAAATGGTGGGAAAAAACCATATACTTTGTTTCAGGGTCATTCAGGGCCAGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

164

Amino Acids

17.37

Weight (kDa)

9.52

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028367)

Species	Orthologous Gene IDs
malus_domestica	MD15G1039000.v1.1
pyrus_communis	pycom15g03660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
Acc65I	GGTACC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	297, 310
AfaI	GTAC	2 cut(s)	126, 406
AgsI	TTSAA	4 cut(s)	61, 176, 191, 417
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	4 cut(s)	32, 145, 243, 386
AluI	AGCT	4 cut(s)	32, 145, 243, 386
AlwI	GGATC	2 cut(s)	297, 310
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	74, 83, 224, 229
Asp700I	GAANNNNTTC	1 cut(s)	426
Asp718I	GGTACC	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	95, 229
AspS9I	GGNCC	1 cut(s)	479
AsuII	TTCGAA	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	397, 429
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	61, 95, 211, 216
BccI	CCATC	2 cut(s)	241, 293
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	4 cut(s)	75, 84, 225, 230
BlsI	GCNGC	4 cut(s)	76, 85, 226, 231
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	304, 406
BpiI	GAAGAC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	155, 482
Bse21I	CCTNAGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	155, 482
BseXI	GCAGC	4 cut(s)	61, 95, 211, 216
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	481
Bsp119I	TTCGAA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	302
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	304, 406
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	2 cut(s)	297, 310
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	155, 482
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	206, 281
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	95, 229
BstKTI	GATC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 83, 92, 151
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	61, 95, 211, 216
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	2 cut(s)	95, 229
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	125, 405
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	2 cut(s)	296, 307
CviJI	RGCY	8 cut(s)	32, 44, 74, 145, 243, 375, 386, 481
CviKI_1	RGCY	8 cut(s)	32, 44, 74, 145, 243, 375, 386, 481
CviQI	GTAC	2 cut(s)	125, 405
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	299, 310
FaiI	YATR	8 cut(s)	249, 290, 297, 308, 346, 353, 454, 456
FatI	CATG	2 cut(s)	295, 306
Fnu4HI	GCNGC	4 cut(s)	75, 84, 225, 230
Fsp4HI	GCNGC	4 cut(s)	75, 84, 225, 230
GlaI	GCGC	2 cut(s)	94, 228
GluI	GCNGC	4 cut(s)	75, 84, 225, 230
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	95, 229
Hin1II	CATG	2 cut(s)	299, 310
Hin6I	GCGC	2 cut(s)	93, 227
HinP1I	GCGC	2 cut(s)	93, 227
HinfI	GANTC	3 cut(s)	132, 329, 380
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	20, 334
HpyCH4III	ACNGT	2 cut(s)	206, 281
HpyCH4V	TGCA	4 cut(s)	83, 122, 211, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 83, 92, 151
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	299, 310
HspAI	GCGC	2 cut(s)	93, 227
KpnI	GGTACC	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	4 cut(s)	61, 95, 211, 216
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	1 cut(s)	203
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	3 cut(s)	17, 159, 212
MlyI	GAGTC	2 cut(s)	141, 323
MnlI	CCTC	2 cut(s)	97, 163
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	20
MunI	CAATTG	1 cut(s)	212
MwoI	GCNNNNNNNGC	4 cut(s)	80, 83, 92, 151
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	299, 310
NlaIV	GGNNCC	2 cut(s)	304, 406
NspV	TTCGAA	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	76, 85, 226, 231
PleI	GAGTC	2 cut(s)	140, 323
PpsI	GAGTC	2 cut(s)	140, 323
PspN4I	GGNNCC	2 cut(s)	304, 406
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	2 cut(s)	126, 406
RsaNI	GTAC	2 cut(s)	125, 405
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	4 cut(s)	75, 84, 225, 230
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	2 cut(s)	141, 323
SetI	ASST	7 cut(s)	34, 147, 174, 245, 345, 388, 396
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	17, 159, 212
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	206, 281
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	17, 159, 212
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	4 cut(s)	74, 83, 224, 229
TspDTI	ATGAA	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.