Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0022334

Physical Location & Seq

Genomic Coordinates Reverse (-)

3125372 .. 3127250

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1045400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCAGCCGCGCCTCTCCTCCGAACGTAAAACCGCACGCCTAAATTTTTTTTTCTTTCCATCTTCTCTGCCGCTGCCTCTTTCTCCCCGTTCTCTCGCAACCTTCCCCCTCATCCTCTCCCGTAGCCTCTGTTTTCTCTTCCCCACGGAGTGGAACTCAAAGCTTTGCATTTCCAGGTTCCAGGAGAAAGTTCCGAACACTGCTGCTAGTGGGGATGGAAGCAGTAATGGAACATTATTTAGAGCTGTTCTGTTAGTTCGAAGAGGAAAGTGTGATGAAGCGCGTGAGTATGTTGAGAGAGCTAGGAAATGCTTGGCAACAGAGCTTGCTGCTTTGATGGATACCAGTGAAGATTTCAAAAGCGTTTTTCTGGAAATGTTGCACAGGGAGATTTGTGTTGGCCAATCCTTACAAATTCAAGGGGTTTCGTGTTCTTCCCCAATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04012 ko04066 ko04072 ko04136 ko04138 ko04139 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04218 ko04371 ko04630 ko04659 ko04714 ko04910 ko04919 ko04920 ko04930 ko04931 ko05165 ko05167 ko05200 ko05205 ko05206 ko05210 ko05212 ko05214 ko05215 ko05221 ko05224 ko05225 ko05226 ko05230 ko05231 map01521 map01522 map04012 map04066 map04072 map04136 map04138 map04139 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04218 map04371 map04630 map04659 map04714 map04910 map04919 map04920 map04930 map04931 map05165 map05167 map05200 map05205 map05206 map05210 map05212 map05214 map05215 map05221 map05224 map05225 map05226 map05230 map05231

Pfam Domains

Protein Families

DUF3385 FAT FATC FRB_dom PI3_PI4_kinase

Protein Analysis

150

Amino Acids

16.71

Weight (kDa)

9.07

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022334)

Species	Orthologous Gene IDs
malus_domestica	MD08G1245300.v1.1 MD15G1045400.v1.1
prunus_persica	Prupe.3G139700_v2.0.a1 Prupe.3G139700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccII	CGCG	2 cut(s)	10, 283
AciI	CCGC	3 cut(s)	8, 33, 71
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	43, 414
AdeI	CACNNNGTG	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	358, 419
AjnI	CCWGG	2 cut(s)	173, 180
AluBI	AGCT	4 cut(s)	163, 245, 302, 325
AluI	AGCT	4 cut(s)	163, 245, 302, 325
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	4 cut(s)	4, 73, 203, 329
ApoI	RAATTY	2 cut(s)	43, 414
AspLEI	GCGC	2 cut(s)	12, 283
AsuII	TTCGAA	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	16, 60, 190, 316
BccI	CCATC	3 cut(s)	67, 209, 331
BciT130I	CCWGG	2 cut(s)	175, 182
BciVI	GTATCC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	207, 303
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	6 cut(s)	5, 8, 71, 74, 204, 330
BlsI	GCNGC	6 cut(s)	6, 9, 72, 75, 205, 331
Bme1390I	CCNGG	2 cut(s)	175, 182
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	175, 182
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu14I	TTCGAA	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	175, 182
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	111, 220
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	4 cut(s)	16, 60, 190, 316
Bsh1236I	CGCG	2 cut(s)	10, 283
BshFI	GGCC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	259
BspACI	CCGC	3 cut(s)	8, 33, 71
BspANI	GGCC	1 cut(s)	402
BspFNI	CGCG	2 cut(s)	10, 283
BspLI	GGNNCC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	175, 182
Bst6I	CTCTTC	2 cut(s)	143, 256
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	2 cut(s)	37, 327
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	111, 220
BstFNI	CGCG	2 cut(s)	10, 283
BstHHI	GCGC	2 cut(s)	12, 283
BstNI	CCWGG	2 cut(s)	175, 182
BstSCI	CCNGG	2 cut(s)	173, 180
BstUI	CGCG	2 cut(s)	10, 283
BstV1I	GCAGC	4 cut(s)	16, 60, 190, 316
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	111, 220
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 352
Cac8I	GCNNGC	2 cut(s)	37, 327
CfoI	GCGC	2 cut(s)	12, 283
CviJI	RGCY	7 cut(s)	7, 126, 163, 245, 302, 325, 402
CviKI_1	RGCY	7 cut(s)	7, 126, 163, 245, 302, 325, 402
DraIII	CACNNNGTG	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	143, 256
EarI	CTCTTC	2 cut(s)	143, 256
EcoRII	CCWGG	2 cut(s)	173, 180
FaiI	YATR	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	5, 8, 71, 74, 204, 330
FokI	GGATG	2 cut(s)	98, 227
Fsp4HI	GCNGC	6 cut(s)	5, 8, 71, 74, 204, 330
FspBI	CTAG	2 cut(s)	207, 303
GlaI	GCGC	2 cut(s)	11, 282
GluI	GCNGC	6 cut(s)	5, 8, 71, 74, 204, 330
HaeIII	GGCC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	12, 283
Hin6I	GCGC	2 cut(s)	10, 281
HinP1I	GCGC	2 cut(s)	10, 281
HindIII	AAGCTT	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	22, 195
Hpy188III	TCNNGA	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	4, 168, 382
HpySE526I	ACGT	1 cut(s)	25
HspAI	GCGC	2 cut(s)	10, 281
LpnPI	CCDG	7 cut(s)	160, 167, 187, 194, 356, 358, 370
Lsp1109I	GCAGC	4 cut(s)	16, 60, 190, 316
MaeI	CTAG	2 cut(s)	207, 303
MaeII	ACGT	1 cut(s)	25
MboII	GAAGA	5 cut(s)	54, 130, 273, 362, 426
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	3 cut(s)	43, 414, 441
MluNI	TGGCCA	1 cut(s)	402
MnlI	CCTC	7 cut(s)	23, 28, 87, 119, 125, 137, 257
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	175, 182
MvaI	CCWGG	2 cut(s)	175, 182
MvnI	CGCG	2 cut(s)	10, 283
NlaIV	GGNNCC	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	150
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	6, 9, 72, 75, 205, 331
Psp6I	CCWGG	2 cut(s)	173, 180
PspGI	CCWGG	2 cut(s)	173, 180
PspN4I	GGNNCC	1 cut(s)	179
SatI	GCNGC	6 cut(s)	5, 8, 71, 74, 204, 330
ScrFI	CCNGG	2 cut(s)	175, 182
SetI	ASST	7 cut(s)	28, 104, 165, 179, 247, 304, 327
SfuI	TTCGAA	1 cut(s)	259
Sse9I	AATT	3 cut(s)	43, 414, 441
SsiI	CCGC	3 cut(s)	8, 33, 71
SspMI	CTAG	2 cut(s)	207, 303
StyD4I	CCNGG	2 cut(s)	173, 180
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	43, 414, 441
TauI	GCSGC	2 cut(s)	10, 73
TscAI	CASTG	2 cut(s)	205, 352
TseI	GCWGC	4 cut(s)	4, 73, 203, 329
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	205, 352
Van91I	CCANNNNNTGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	43, 414
XspI	CTAG	2 cut(s)	207, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.