MD15G1045800.v1.1

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0028361
Physical Location & Seq
Forward (+)
3143299 .. 3144624
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1045800.v1.1.491

Sequence Viewer

Length: 765 bp
ATGAAGTTTAGGAAACCAACCAACCTCATAATTTGTACCTTCTTCTTCCTGGTTTCTTTGAGAATGAATATTTCCTTCGCCATGCGGGTGAAGTCGCAGAACACAACAATCCCAGTGAATGTTGGTGTGGTTTTTGTTCATGTTGCAGATGCAGCAATAGCAACTGGATTCTGGACACCACGATGTGGACTTGCGAAGGGATTGAATTCAACTTCCAAATCGAACAATGATTTCGTCGGTCAAGTTTTTCTTGGGGATTACGATGCTTTAGCCGCAGCCCCGACAATCAGAGCAAACAGTTCTTTGTATGTGGATTTCACAATGCCATACACGGAATCAGGTGTGGCGATGGTGGTGCCAACGAAAGATTACACGAGCAAAAATGCATGGGTTTTCTTGAAGCCTCTTTCATGGGATCTCTGGTCGATTTGTCTTTGCTTTTTCATCTGGACTGGTTTCGCGGTTAGTGTTCTTGAACACCGCATTAATGAAGAGTTTCGTGGTCCTCCCTCCGATCAAGTTGGCACAATAAGATTTTTAGGCCCCATACTCATTGCTGGGGTGGCTTCGTCATTAGCTCTCATCATATCTGCAGCCTCCTTCTTTTACAGGTACGGGTACGTCTTAATGACAAGAGTCGCCTTCGTGTGGAGAAGTATTCGGGACATGTTTGGAACGAAGAATTCGGGTCTTGATGCCGTCGAGTCTTTGCCTGCAGGACCTGCTGGCCAAGCCCCTCAAGCCATTCAAATCACACAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

255

Amino Acids

27.94

Weight (kDa)

9.25

Isoelectric Point (pI)

23.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028361)

Species Orthologous Gene IDs
malus_domestica MD15G1045800.v1.1
pyrus_communis pycom15g04270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 730
AccB1I GGYRCC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 185
AccII CGCG 1 cut(s) 461
AciI CCGC 4 cut(s) 85, 273, 461, 481
AclWI GGATC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 2 cut(s) 205, 682
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 3 cut(s) 37, 614, 620
AfiI CCNNNNNNNGG 2 cut(s) 185, 648
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 5 cut(s) 205, 210, 400, 476, 749
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 578
AluI AGCT 1 cut(s) 578
AlwI GGATC 1 cut(s) 423
AlwNI CAGNNNCTG 1 cut(s) 722
AoxI GGCC 2 cut(s) 541, 727
ApeKI GCWGC 3 cut(s) 152, 275, 593
ApoI RAATTY 2 cut(s) 205, 682
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 3 cut(s) 503, 542, 719
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 2 cut(s) 503, 719
BalI TGGCCA 1 cut(s) 729
BanI GGYRCC 1 cut(s) 355
BauI CACGAG 1 cut(s) 373
BbvI GCAGC 3 cut(s) 164, 287, 605
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 683
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 50
BfaI CTAG 1 cut(s) 763
BfmI CTRYAG 2 cut(s) 591, 714
BfuAI ACCTGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 759
BisI GCNGC 4 cut(s) 153, 273, 276, 594
BlsI GCNGC 4 cut(s) 154, 274, 277, 595
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 2 cut(s) 503, 719
BmgT120I GGNCC 3 cut(s) 503, 542, 719
BmiI GGNNCC 2 cut(s) 357, 544
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 3 cut(s) 139, 253, 685
BmuI ACTGGG 1 cut(s) 107
BoxI GACNNNNGTC 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 723
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 648
Bse1I ACTGG 3 cut(s) 113, 169, 457
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 185, 648
BseMI GCAATG 1 cut(s) 552
BseNI ACTGG 3 cut(s) 113, 169, 457
BseXI GCAGC 3 cut(s) 164, 287, 605
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 2 cut(s) 543, 729
BshNI GGYRCC 1 cut(s) 355
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 2 cut(s) 185, 648
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 2 cut(s) 543, 729
Bsp143I GATC 3 cut(s) 415, 514, 759
BspACI CCGC 4 cut(s) 85, 273, 461, 481
BspANI GGCC 2 cut(s) 543, 729
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 2 cut(s) 357, 544
BspMAI CTGCAG 2 cut(s) 595, 718
BspMI ACCTGC 1 cut(s) 730
BspPI GGATC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 3 cut(s) 113, 169, 457
BssMI GATC 3 cut(s) 415, 514, 759
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 714, 727
BstFNI CGCG 1 cut(s) 461
BstKTI GATC 3 cut(s) 418, 517, 762
BstMBI GATC 3 cut(s) 415, 514, 759
BstMWI GCNNNNNNNGC 7 cut(s) 152, 158, 272, 563, 722, 731, 740
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 670
BstPAI GACNNNNGTC 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 2 cut(s) 591, 714
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 3 cut(s) 164, 287, 605
BstX2I RGATCY 2 cut(s) 415, 759
BstYI RGATCY 2 cut(s) 415, 759
BsuRI GGCC 2 cut(s) 543, 729
BtgZI GCGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 2 cut(s) 714, 727
CaiI CAGNNNCTG 1 cut(s) 722
Cfr13I GGNCC 3 cut(s) 503, 542, 719
Csp6I GTAC 3 cut(s) 36, 613, 619
CviAII CATG 5 cut(s) 82, 140, 387, 411, 667
CviQI GTAC 3 cut(s) 36, 613, 619
DpnI GATC 3 cut(s) 417, 516, 761
DpnII GATC 3 cut(s) 415, 514, 759
DraIII CACNNNGTG 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco47I GGWCC 2 cut(s) 503, 719
EcoO109I RGGNCCY 2 cut(s) 542, 719
EcoRI GAATTC 2 cut(s) 205, 682
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 388
FaeI CATG 5 cut(s) 85, 143, 390, 414, 670
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 1 cut(s) 677
FatI CATG 5 cut(s) 81, 139, 386, 410, 666
FauI CCCGC 1 cut(s) 78
Fnu4HI GCNGC 4 cut(s) 153, 273, 276, 594
Fsp4HI GCNGC 4 cut(s) 153, 273, 276, 594
FspBI CTAG 1 cut(s) 763
GluI GCNGC 4 cut(s) 153, 273, 276, 594
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 2 cut(s) 543, 729
Hin1II CATG 5 cut(s) 85, 143, 390, 414, 670
HinfI GANTC 4 cut(s) 168, 335, 636, 704
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 290, 514
Hpy188III TCNNGA 6 cut(s) 172, 397, 448, 473, 662, 692
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 2 cut(s) 239, 704
HpyAV CCTTC 5 cut(s) 49, 85, 190, 610, 652
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 5 cut(s) 146, 152, 386, 593, 716
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 158, 272, 563, 722, 731, 740
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 5 cut(s) 85, 143, 390, 414, 670
Kzo9I GATC 3 cut(s) 415, 514, 759
Lsp1109I GCAGC 3 cut(s) 164, 287, 605
LweI GCATC 3 cut(s) 139, 253, 685
MaeI CTAG 1 cut(s) 763
MaeII ACGT 1 cut(s) 621
MalI GATC 3 cut(s) 417, 516, 761
MboI GATC 3 cut(s) 415, 514, 759
MboII GAAGA 4 cut(s) 34, 37, 503, 691
MflI RGATCY 2 cut(s) 415, 759
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 3 cut(s) 30, 205, 682
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 2 cut(s) 645, 713
MnlI CCTC 6 cut(s) 35, 414, 516, 520, 607, 747
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 729
MseI TTAA 2 cut(s) 486, 626
MslI CAYNNNNRTG 2 cut(s) 86, 181
Msp20I TGGCCA 1 cut(s) 729
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 7 cut(s) 152, 158, 272, 563, 722, 731, 740
NdeII GATC 3 cut(s) 415, 514, 759
NlaIII CATG 5 cut(s) 85, 143, 390, 414, 670
NlaIV GGNNCC 2 cut(s) 357, 544
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 1 cut(s) 670
PciI ACATGT 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 168, 335
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 4 cut(s) 154, 274, 277, 595
PleI GAGTC 2 cut(s) 644, 712
PpsI GAGTC 2 cut(s) 644, 712
PpuMI RGGWCCY 1 cut(s) 719
PscI ACATGT 1 cut(s) 666
PshAI GACNNNNGTC 1 cut(s) 635
PshBI ATTAAT 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 357, 544
PspPI GGNCC 3 cut(s) 503, 542, 719
PspPPI RGGWCCY 1 cut(s) 719
PstI CTGCAG 2 cut(s) 595, 718
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 2 cut(s) 415, 759
RsaI GTAC 3 cut(s) 37, 614, 620
RsaNI GTAC 3 cut(s) 36, 613, 619
RseI CAYNNNNRTG 2 cut(s) 86, 181
SaqAI TTAA 2 cut(s) 486, 626
SatI GCNGC 4 cut(s) 153, 273, 276, 594
Sau3AI GATC 3 cut(s) 415, 514, 759
Sau96I GGNCC 3 cut(s) 503, 542, 719
SbfI CCTGCAGG 1 cut(s) 718
SchI GAGTC 2 cut(s) 645, 713
ScrFI CCNGG 1 cut(s) 50
SdaI CCTGCAGG 1 cut(s) 718
SetI ASST 7 cut(s) 27, 41, 343, 580, 614, 624, 724
SfaNI GCATC 3 cut(s) 139, 253, 685
SfcI CTRYAG 2 cut(s) 591, 714
SinI GGWCC 2 cut(s) 503, 719
SmiMI CAYNNNNRTG 2 cut(s) 86, 181
SmlI CTYRAG 1 cut(s) 738
SmoI CTYRAG 1 cut(s) 738
Sse8387I CCTGCAGG 1 cut(s) 718
Sse9I AATT 3 cut(s) 30, 205, 682
SsiI CCGC 4 cut(s) 85, 273, 461, 481
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 763
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 624
TaqI TCGA 3 cut(s) 221, 425, 702
TaqII GACCGA 1 cut(s) 227
TasI AATT 3 cut(s) 30, 205, 682
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 168, 335
Tru1I TTAA 2 cut(s) 486, 626
Tru9I TTAA 2 cut(s) 486, 626
TscAI CASTG 1 cut(s) 120
TseI GCWGC 3 cut(s) 152, 275, 593
TspDTI ATGAA 6 cut(s) 17, 80, 128, 399, 433, 504
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 503, 719
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 2 cut(s) 205, 682
XceI RCATGY 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 1 cut(s) 763
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.