MD15G1077600.v1.1
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0028365
Physical Location & Seq
Forward (+)
5298469 .. 5299447
979 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1077600.v1.1.491

Sequence Viewer

Length: 495 bp
ATGCAAAGACCTTACCTACCAATCCAACATCCCTACATCCTCAAACCAAATCCTCAGATGATTGCAAACCATGATCAAACAGCTTTATCAGTCTACGAAAAGCGCCAACTGACCGGCGTGAAAAGATTGTTCAACGAAGTCCCTGATCATTCCCAAACCAAGTCCATAAACTTGGGCTGGAACACCCCACAAAATGGACTTCCAGGATCACCACCTTGGCCAATTCTTCCTCTTCTGCCCTCCATTTCTTGCAGCCTTGGAGCTCTACTGTCGAAGCTACCTTCGGTTAATATCCCATCCTATAATTCTGGTGAAGCTCCTGACAGAGACATGCTTATGAACACCATGAGCAACAGTGGCAACAATTGTGCAGACCAGATGCTGAAGATTAGTGGTGGCATTACGAAAATAGAGTCATCCTGTCACTCGTATGCAGCTAATGAAGAAAAGCACAGTTCCATGAACCCTAATTTGGGTTTAGAAAATGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

165

Amino Acids

17.98

Weight (kDa)

6.5

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028365)

Species Orthologous Gene IDs
malus_domestica MD15G1077600.v1.1
pyrus_communis pycom08g07640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AccI GTMKAC 1 cut(s) 93
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 194, 472, 473
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 5 cut(s) 83, 263, 277, 317, 437
AluI AGCT 5 cut(s) 83, 263, 277, 317, 437
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 382
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 252, 434
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 201, 323
BalI TGGCCA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 264, 446
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 2 cut(s) 73, 145
BcoDI GTCTC 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 2 cut(s) 253, 435
BlsI GCNGC 2 cut(s) 254, 436
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 215, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 472, 473
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 215, 256
BseGI GGATG 4 cut(s) 28, 36, 296, 416
BseLI CCNNNNNNNGG 3 cut(s) 194, 472, 473
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 264, 446
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 194, 472, 473
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 73, 145, 206
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 215, 256
BssMI GATC 3 cut(s) 73, 145, 206
BssT1I CCWWGG 2 cut(s) 215, 256
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 270, 356, 455
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 4 cut(s) 28, 36, 296, 416
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 76, 148, 209
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 73, 145, 206
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 264, 446
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 4 cut(s) 28, 36, 296, 416
BtsIMutI CAGTG 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 113
CviAII CATG 4 cut(s) 71, 331, 346, 460
CviJI RGCY 8 cut(s) 83, 177, 220, 255, 263, 277, 317, 437
CviKI_1 RGCY 8 cut(s) 83, 177, 220, 255, 263, 277, 317, 437
DdeI CTNAG 1 cut(s) 54
DpnI GATC 3 cut(s) 75, 147, 208
DpnII GATC 3 cut(s) 73, 145, 206
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 215, 256
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 215, 256
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 215, 256
FaeI CATG 4 cut(s) 74, 334, 349, 463
FaiI YATR 8 cut(s) 72, 167, 303, 332, 338, 347, 432, 461
FaqI GGGAC 1 cut(s) 125
FatI CATG 4 cut(s) 70, 330, 345, 459
FbaI TGATCA 2 cut(s) 73, 145
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 253, 435
FokI GGATG 4 cut(s) 15, 23, 283, 403
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 253, 435
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 253, 435
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 1 cut(s) 220
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 105
Hin1II CATG 4 cut(s) 74, 334, 349, 463
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 413
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 201, 323
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 3 cut(s) 270, 356, 455
HpyCH4V TGCA 5 cut(s) 4, 65, 252, 371, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 4 cut(s) 74, 334, 349, 463
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 2 cut(s) 73, 145
Kzo9I GATC 3 cut(s) 73, 145, 206
LmnI GCTCC 2 cut(s) 260, 322
LpnPI CCDG 9 cut(s) 127, 156, 163, 189, 216, 294, 333, 389, 433
Lsp1109I GCAGC 2 cut(s) 264, 446
LweI GCATC 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 422
MalI GATC 3 cut(s) 75, 147, 208
MboI GATC 3 cut(s) 73, 145, 206
MboII GAAGA 4 cut(s) 218, 224, 397, 455
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 4 cut(s) 222, 304, 364, 469
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 50, 63, 240, 250, 481
Mox20I TGGCCA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 220
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 2 cut(s) 335, 429
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 3 cut(s) 73, 145, 206
NlaIII CATG 4 cut(s) 74, 334, 349, 463
NmuCI GTSAC 1 cut(s) 422
NspI RCATGY 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 2 cut(s) 254, 436
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 382
RseI CAYNNNNRTG 2 cut(s) 335, 429
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 253, 435
Sau3AI GATC 3 cut(s) 73, 145, 206
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 265
SetI ASST 9 cut(s) 13, 18, 85, 217, 265, 279, 283, 319, 439
SfaNI GCATC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 335, 429
Sse9I AATT 4 cut(s) 222, 304, 364, 469
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 2 cut(s) 215, 256
TaaI ACNGT 3 cut(s) 270, 356, 455
TaqI TCGA 1 cut(s) 272
TasI AATT 4 cut(s) 222, 304, 364, 469
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 252, 434
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 353, 456, 476
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 194
XceI RCATGY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.