pycom08g07640
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0028365
Physical Location & Seq
Forward (+)
6152828 .. 6153349
522 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07640.1

Sequence Viewer

Length: 522 bp
ATGCAAAGACCGTACCTACCAATCCAACATCCCTACATCTTCAAACCAAATCCTCAGATGATTGGAACTGAAGTTCAAACAGCTTTATCAGTCTACGAAAAGCGCCAACTGACCGGTGTGAAAAGATTGTTCAGTGAAGTTCCTGATGATTCCCAAATCAAGTCTATAAACTTAGGCTGGAACACACCACAAAATGGATTAGCAGGATCACCACCTTGGCCAATTGCTCCTCTTCTGCCCTCTATTTCTTGCAGCCTTGGAGCTCTCCTATCGAAGCTGCCTTCGGTTAATATTCCATCGCATAATGTCGCTGAAGCCCCTGACATGCTTATGAGCAACAACAGGAACAATTGTGCAGACCAGATGCAGAAGATTAGTGGTGACCTTACGAAAATAGAGTCATCCTGTCATTTAGATGTAGCTCATGAAGAAAAGCACAGTTCCGTAAACCCTAATTTGGGTTTGGAAAATGGAGGAGGGGTAGACTTAGGATTCGGACCGGTTCGAAAACAAGAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

174

Amino Acids

18.85

Weight (kDa)

6.18

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028365)

Species Orthologous Gene IDs
malus_domestica MD15G1077600.v1.1
pyrus_communis pycom08g07640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AccI GTMKAC 2 cut(s) 93, 483
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 218
AcuI CTGAAG 2 cut(s) 90, 333
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 194, 457, 458
AgeI ACCGGT 2 cut(s) 113, 499
AgsI TTSAA 2 cut(s) 43, 77
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 4 cut(s) 83, 263, 277, 422
AluI AGCT 4 cut(s) 83, 263, 277, 422
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 214
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 252, 277
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 476, 508
AsiGI ACCGGT 2 cut(s) 113, 499
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 201, 392
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 264, 264
BccI CCATC 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 2 cut(s) 253, 278
BlsI GCNGC 2 cut(s) 254, 279
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmsI GCATC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 215, 256
BsaWI WCCGGW 2 cut(s) 113, 499
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 457, 458
Bse118I RCCGGY 2 cut(s) 113, 499
BseDI CCNNGG 2 cut(s) 215, 256
BseGI GGATG 2 cut(s) 28, 401
BseLI CCNNNNNNNGG 3 cut(s) 194, 457, 458
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 219, 489
BseXI GCAGC 2 cut(s) 264, 264
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 1 cut(s) 220
BshTI ACCGGT 2 cut(s) 113, 499
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 114, 500
BslI CCNNNNNNNGG 3 cut(s) 194, 457, 458
BsmAI GTCTC 1 cut(s) 509
BsnI GGCC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 206
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 424
BspPI GGATC 1 cut(s) 214
BspT104I TTCGAA 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 113, 499
BssAI RCCGGY 2 cut(s) 113, 499
BssECI CCNNGG 2 cut(s) 215, 256
BssMI GATC 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 215, 256
Bst4CI ACNGT 2 cut(s) 12, 440
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 54, 172, 487
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 2 cut(s) 28, 401
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 209
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 328
BstPI GGTNACC 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 264, 264
BsuRI GGCC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 28, 401
BtsIMutI CAGTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 2 cut(s) 113, 499
Cfr13I GGNCC 1 cut(s) 497
CpoI CGGWCCG 1 cut(s) 497
Csp6I GTAC 1 cut(s) 13
CspAI ACCGGT 2 cut(s) 113, 499
CspI CGGWCCG 1 cut(s) 497
CviAII CATG 2 cut(s) 325, 425
CviJI RGCY 8 cut(s) 83, 177, 220, 255, 263, 277, 317, 422
CviKI_1 RGCY 8 cut(s) 83, 177, 220, 255, 263, 277, 317, 422
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 54, 172, 487
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 215, 256
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 497
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 90, 333
Eco91I GGTNACC 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 380
EcoT14I CCWWGG 2 cut(s) 215, 256
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 215, 256
FaeI CATG 2 cut(s) 328, 428
FaiI YATR 5 cut(s) 167, 303, 326, 332, 426
FatI CATG 2 cut(s) 324, 424
FblI GTMKAC 2 cut(s) 93, 483
Fnu4HI GCNGC 2 cut(s) 253, 278
FokI GGATG 2 cut(s) 15, 388
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 253, 278
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 253, 278
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 114, 500
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 328, 428
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 3 cut(s) 149, 398, 492
HpaII CCGG 2 cut(s) 114, 500
HphI GGTGA 2 cut(s) 201, 392
Hpy166II GTNNAC 3 cut(s) 94, 448, 484
Hpy188I TCNGA 2 cut(s) 57, 497
Hpy188III TCNNGA 2 cut(s) 143, 425
Hpy8I GTNNAC 3 cut(s) 94, 448, 484
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 12, 440
HpyCH4V TGCA 4 cut(s) 4, 252, 356, 367
HpyF3I CTNAG 3 cut(s) 54, 172, 487
Hsp92II CATG 2 cut(s) 328, 428
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 232, 260
LpnPI CCDG 9 cut(s) 127, 156, 163, 189, 328, 333, 374, 418, 513
Lsp1109I GCAGC 2 cut(s) 264, 264
LweI GCATC 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 380
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 4 cut(s) 31, 224, 382, 440
MfeI CAATTG 2 cut(s) 222, 349
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 3 cut(s) 222, 349, 454
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 63, 240, 250, 467, 470
Mox20I TGGCCA 1 cut(s) 220
MscI TGGCCA 1 cut(s) 220
MseI TTAA 2 cut(s) 288, 520
MslI CAYNNNNRTG 2 cut(s) 329, 414
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 2 cut(s) 114, 500
MunI CAATTG 2 cut(s) 222, 349
NdeII GATC 1 cut(s) 206
NlaIII CATG 2 cut(s) 328, 428
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 328
NspV TTCGAA 1 cut(s) 505
PagI TCATGA 1 cut(s) 424
PfeI GAWTC 2 cut(s) 149, 492
PflMI CCANNNNNTGG 1 cut(s) 194
PinAI ACCGGT 2 cut(s) 113, 499
PkrI GCNGC 2 cut(s) 254, 279
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 265
PspEI GGTNACC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 497
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 2 cut(s) 329, 414
Rsr2I CGGWCCG 1 cut(s) 497
RsrII CGGWCCG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 288, 520
SatI GCNGC 2 cut(s) 253, 278
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 1 cut(s) 407
SduI GDGCHC 1 cut(s) 265
SetI ASST 7 cut(s) 18, 85, 217, 265, 279, 387, 424
SfaNI GCATC 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 2 cut(s) 329, 414
Sse9I AATT 3 cut(s) 222, 349, 454
SspI AATATT 1 cut(s) 292
SstI GAGCTC 1 cut(s) 265
StyI CCWWGG 2 cut(s) 215, 256
TaaI ACNGT 2 cut(s) 12, 440
TaqI TCGA 2 cut(s) 272, 505
TasI AATT 3 cut(s) 222, 349, 454
TfiI GAWTC 2 cut(s) 149, 492
Tru1I TTAA 2 cut(s) 288, 520
Tru9I TTAA 2 cut(s) 288, 520
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 252, 277
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 497
XceI RCATGY 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 93, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.