MD15G1091500.v1.1

Lachrymatory-factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0024287
Physical Location & Seq
Forward (+)
6356974 .. 6357159
186 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1091500.v1.1.491

Sequence Viewer

Length: 186 bp
ATGGGAGAAAACCAGTCACCATTAAAATGGGAAGGCAAAACCTCTAGAGAGCTCAAGGGCCATGCAGCAGAACAAGTTTGGCCTCTCTGGGCTGATTTTTGTAACTTTCACAAATGGTTGCCAGTCCTTGACGCATGTTACCTAGTTGACGGAGTCCCCAGCCAGCCAGGTGTGACCCGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

62

Amino Acids

6.99

Weight (kDa)

6.02

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 15 - 54 3.4e-06 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024287)

Species Orthologous Gene IDs
malus_domestica MD15G1091400.v1.1 MD15G1091500.v1.1
pyrus_communis pycom15g08540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 182
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 54
AoxI GGCC 2 cut(s) 58, 80
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 9
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 168
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 2 cut(s) 45, 143
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 168, 178
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 168, 178
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 13, 122
BseBI CCWGG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 13, 122
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 2 cut(s) 60, 82
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 60, 82
Bsp1286I GDGCHC 1 cut(s) 54
BspANI GGCC 2 cut(s) 60, 82
BsrI ACTGG 2 cut(s) 13, 122
Bst2UI CCWGG 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 166, 176
BstV1I GCAGC 1 cut(s) 77
BstXI CCANNNNNNTGG 1 cut(s) 27
BsuRI GGCC 2 cut(s) 60, 82
Cac8I GCNNGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 58
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 62, 135
CviJI RGCY 6 cut(s) 52, 60, 82, 92, 162, 166
CviKI_1 RGCY 6 cut(s) 52, 60, 82, 92, 162, 166
CviQI GTAC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 2 cut(s) 65, 138
FaiI YATR 2 cut(s) 63, 136
FaqI GGGAC 1 cut(s) 140
FatI CATG 2 cut(s) 61, 134
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 45, 143
GluI GCNGC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 60, 82
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 140
Hin1II CATG 2 cut(s) 65, 138
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 153
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 65
Hsp92II CATG 2 cut(s) 65, 138
LpnPI CCDG 7 cut(s) 26, 73, 135, 153, 172, 176, 180
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 2 cut(s) 45, 143
MaeIII GTNAC 4 cut(s) 15, 101, 137, 172
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 2 cut(s) 52, 93
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 25
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 168, 178
MvaI CCWGG 1 cut(s) 168
NciI CCSGG 1 cut(s) 178
NlaIII CATG 2 cut(s) 65, 138
NmuCI GTSAC 2 cut(s) 15, 172
NspI RCATGY 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 25
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 168, 178
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 44, 54, 144, 172
SmiMI CAYNNNNRTG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SspMI CTAG 2 cut(s) 45, 143
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 166, 176
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseFI GTSAC 2 cut(s) 15, 172
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 2 cut(s) 15, 172
TspGWI ACGGA 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 152
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 45, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.