MD15G1100400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
6974309 .. 6975874
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1100400.v1.1.491

Sequence Viewer

Length: 399 bp
ATGTTGGATAGCATTATTCAAGAGATGTCGGGTAGCATTTCTTCGTTGCCGACTGAAATCAAGTTTCTCCAGAAAAACGGGTCATTAGTTGAGCAGCAGGTTAGGAAGGCTCATGCACGTGCTGATGAACTAGAGAAGAAGGTTAATGAACTTGAACAGAAATTACAATCGCAACGTAAGGAGAAAGAGGAATTGGAATCCTGGACAAATGAAGCTGAGGAGAAGATTGATGATTTGCTTTCAGAAATAGAGAATATTGGGAAGACTAATGATGAGCAGGAGACCAAAATCCGTAAAACTGAGCATGCTCTTGAAGTTAAAGTGGCTGAGGTGGAAATGTGGAAGGCGAAATTTGAAGCTACTCTAAAAGCAAAAGTGTTAAATGAGGTATTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.21

Weight (kDa)

4.97

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP15 PF23649 14 - 122 1.5e-06 FK506-binding protein 15-like domain
CCDC39 PF24161 30 - 113 9.3e-06 Coiled-coil domain-containing protein 39
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0028354)

Species Orthologous Gene IDs
malus_domestica MD15G1100400.v1.1
pyrus_communis pycom15g09270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 350
AcvI CACGTG 1 cut(s) 119
AgsI TTSAA 4 cut(s) 20, 155, 314, 356
AjnI CCWGG 1 cut(s) 200
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 215, 359
AluI AGCT 2 cut(s) 215, 359
Alw26I GTCTC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BbrPI CACGTG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 269
BbvCI CCTCAGC 2 cut(s) 216, 327
BbvI GCAGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 53
Bpu10I CCTNAGC 2 cut(s) 216, 327
BsaAI YACGTR 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 275
BseBI CCWGG 1 cut(s) 202
BseMII CTCAG 3 cut(s) 207, 291, 318
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 275
BspCNI CTCAG 3 cut(s) 208, 292, 319
BspMI ACCTGC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 216, 300, 327
BstMAI GTCTC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 269
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 306
CviAII CATG 2 cut(s) 113, 305
CviJI RGCY 4 cut(s) 110, 215, 326, 359
CviKI_1 RGCY 4 cut(s) 110, 215, 326, 359
DdeI CTNAG 3 cut(s) 216, 300, 327
Eco31I GGTCTC 1 cut(s) 275
Eco72I CACGTG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 116, 308
FaiI YATR 2 cut(s) 114, 306
FatI CATG 2 cut(s) 112, 304
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 53
Hin1II CATG 2 cut(s) 116, 308
HinfI GANTC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 20, 70, 311
HpyAV CCTTC 3 cut(s) 100, 133, 337
HpyCH4IV ACGT 2 cut(s) 118, 175
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 216, 300, 327
HpySE526I ACGT 2 cut(s) 118, 175
Hsp92II CATG 2 cut(s) 116, 308
LpnPI CCDG 5 cut(s) 83, 83, 187, 214, 263
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 118, 175
MboII GAAGA 4 cut(s) 33, 148, 235, 274
MluCI AATT 3 cut(s) 161, 191, 350
MnlI CCTC 4 cut(s) 181, 211, 322, 379
MseI TTAA 5 cut(s) 144, 318, 380, 392, 397
MslI CAYNNNNRTG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
NlaIII CATG 2 cut(s) 116, 308
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 1 cut(s) 96
PmaCI CACGTG 1 cut(s) 119
PmlI CACGTG 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 200
PspCI CACGTG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 200
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 5 cut(s) 144, 318, 380, 392, 397
SatI GCNGC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 202
SetI ASST 8 cut(s) 102, 121, 144, 178, 217, 333, 361, 390
SmiMI CAYNNNNRTG 1 cut(s) 117
SphI GCATGC 1 cut(s) 308
Sse9I AATT 3 cut(s) 161, 191, 350
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 200
TaiI ACGT 2 cut(s) 121, 178
TasI AATT 3 cut(s) 161, 191, 350
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 5 cut(s) 144, 318, 380, 392, 397
Tru9I TTAA 5 cut(s) 144, 318, 380, 392, 397
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 3 cut(s) 141, 162, 225
TspGWI ACGGA 1 cut(s) 281
XapI RAATTY 1 cut(s) 350
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.