MD15G1149600.v1.1

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0028393
Physical Location & Seq
Forward (+)
11052259 .. 11053358
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1149600.v1.1.491

Sequence Viewer

Length: 795 bp
ATGAAGGATTTTCGACCCAAAACGGCGTGCCGTTTCTCTGGAAATTTGCCTCCTTATCCCAGACCAAAACCCACTCAGTGGAAAGGGCGAGACTCTCCGGTCTCCGCACCTCAGCGGAAAAGCCATGTCCCTCCTTCCCTCCACCTCCAAGCTTTGCTGAAATTGAAGCACAAAGAAGTGCAGGGGACGTCAAGAACAAGTGCGAGGGCATATGGAGGCTGTCCAAGCTCGGCGTCTCCGTCGACAAGGACCCCGGAAAGGACTTTTTCGGCGTCTCCGATGGCTTGCTCGAACAGATTGCCAGAGTGCTCGAATTTCCCGGTTCCTTCGATGCTGCCGACGGAGGCCTTCACGGTGGTTCTGAAATCTTTTGATGCAAGGAAGGTATCAAGTAATGTGCTGAAAGAACCGAAATTCGTATACATTGTGGAAATGGATGTCGACAAACTTCTGAGTCTGGACCCTCGCACTTGGGGACTTCATTCCGAGTTGGAGCCGAAAGTCGGGCTGGTAGAACACATGCCTGAAGCGAGAAAATCTGGAGATTCGATCAGTATAATATATATGACTTATAAAAAGTACATCAAGGTACAGTTTCTAGTGGTGGTGGACATAACACGAAAAATGGATCCGGAAGGACATACACGTAAGCACCCCACGGCTACAGAACCAAAAATTGCAGTGGTGGGTAGCGGATCATCAGGGTTGTTTGCCGCCCTTGTTCTTGCGGAATTTGGTGCAAAAGGAGAAATAAGTATACAGCATTTTTATTTTCCTACAAACCCTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_2 FAD_binding_3 Pyr_redox Pyr_redox_2

Protein Analysis

265

Amino Acids

29.23

Weight (kDa)

9.69

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028393)

Species Orthologous Gene IDs
malus_domestica MD15G1149600.v1.1
pyrus_communis pycom15g13370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 4 cut(s) 242, 420, 441, 757
AccIII TCCGGA 1 cut(s) 631
AciI CCGC 5 cut(s) 105, 115, 693, 714, 728
AclWI GGATC 3 cut(s) 623, 636, 703
AcsI RAATTY 4 cut(s) 43, 313, 413, 731
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 3 cut(s) 188, 233, 272
AdeI CACNNNGTG 1 cut(s) 78
AfaI GTAC 2 cut(s) 581, 591
AfiI CCNNNNNNNGG 3 cut(s) 78, 258, 503
AflIII ACRYGT 1 cut(s) 644
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 2 cut(s) 152, 228
AluI AGCT 2 cut(s) 152, 228
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 4 cut(s) 84, 106, 240, 279
AlwI GGATC 3 cut(s) 623, 636, 703
Aor13HI TCCGGA 1 cut(s) 631
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 4 cut(s) 43, 313, 413, 731
AspS9I GGNCC 2 cut(s) 249, 460
AsuC2I CCSGG 2 cut(s) 254, 320
AvaII GGWCC 2 cut(s) 249, 460
BamHI GGATCC 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 311
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 321
BccI CCATC 1 cut(s) 274
BceAI ACGGC 3 cut(s) 15, 39, 675
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BcnI CCSGG 2 cut(s) 254, 320
BcoDI GTCTC 4 cut(s) 84, 106, 240, 279
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 663
BisI GCNGC 2 cut(s) 335, 714
BlsI GCNGC 2 cut(s) 336, 715
Bme1390I CCNGG 2 cut(s) 254, 320
Bme18I GGWCC 2 cut(s) 249, 460
BmgT120I GGNCC 2 cut(s) 249, 460
BmiI GGNNCC 5 cut(s) 251, 324, 462, 495, 630
BmrFI CCNGG 2 cut(s) 254, 320
BmsI GCATC 2 cut(s) 321, 364
BpmI CTGGAG 1 cut(s) 561
Bpu10I CCTNAGC 1 cut(s) 111
BpuMI CCSGG 2 cut(s) 254, 320
BsaAI YACGTR 1 cut(s) 647
BsaHI GRCGYC 3 cut(s) 188, 233, 272
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 252, 657
BsaWI WCCGGW 2 cut(s) 97, 631
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 258, 503
BseAI TCCGGA 1 cut(s) 631
BseDI CCNNGG 2 cut(s) 252, 657
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 78, 258, 503
BseMII CTCAG 3 cut(s) 89, 125, 443
BseXI GCAGC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 4 cut(s) 98, 254, 320, 632
BslFI GGGAC 3 cut(s) 113, 199, 489
BslI CCNNNNNNNGG 3 cut(s) 78, 258, 503
BsmAI GTCTC 4 cut(s) 84, 106, 240, 279
BsmBI CGTCTC 2 cut(s) 240, 279
BsmFI GGGAC 3 cut(s) 113, 199, 489
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 311
Bsp13I TCCGGA 1 cut(s) 631
Bsp143I GATC 3 cut(s) 549, 628, 695
BspACI CCGC 5 cut(s) 105, 115, 693, 714, 728
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 3 cut(s) 88, 124, 444
BspEI TCCGGA 1 cut(s) 631
BspLI GGNNCC 5 cut(s) 251, 324, 462, 495, 630
BspPI GGATC 3 cut(s) 623, 636, 703
BspTNI GGTCTC 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 252, 657
BssMI GATC 3 cut(s) 549, 628, 695
BssNAI GTATAC 2 cut(s) 421, 758
BssNI GRCGYC 3 cut(s) 188, 233, 272
Bst1107I GTATAC 2 cut(s) 421, 758
Bst4CI ACNGT 2 cut(s) 355, 594
BstACI GRCGYC 3 cut(s) 188, 233, 272
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 28, 286
BstDEI CTNAG 3 cut(s) 75, 111, 452
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 442
BstKTI GATC 3 cut(s) 552, 631, 698
BstMAI GTCTC 4 cut(s) 84, 106, 240, 279
BstMBI GATC 3 cut(s) 549, 628, 695
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 2 cut(s) 252, 318
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BstZ17I GTATAC 2 cut(s) 421, 758
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 2 cut(s) 83, 687
Cac8I GCNNGC 2 cut(s) 28, 286
Cfr13I GGNCC 2 cut(s) 249, 460
CseI GACGC 2 cut(s) 222, 261
Csp6I GTAC 2 cut(s) 580, 590
CviAII CATG 2 cut(s) 125, 520
CviJI RGCY 9 cut(s) 123, 152, 219, 228, 284, 347, 496, 508, 662
CviKI_1 RGCY 9 cut(s) 123, 152, 219, 228, 284, 347, 496, 508, 662
CviQI GTAC 2 cut(s) 580, 590
DdeI CTNAG 3 cut(s) 75, 111, 452
DpnI GATC 3 cut(s) 551, 630, 697
DpnII GATC 3 cut(s) 549, 628, 695
DraIII CACNNNGTG 1 cut(s) 78
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 249, 460
Eco57I CTGAAG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 249
Esp3I CGTCTC 2 cut(s) 240, 279
FaeI CATG 2 cut(s) 128, 523
FaqI GGGAC 3 cut(s) 113, 199, 489
FatI CATG 2 cut(s) 124, 519
FauNDI CATATG 1 cut(s) 211
FblI GTMKAC 4 cut(s) 242, 420, 441, 757
Fnu4HI GCNGC 2 cut(s) 335, 714
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 335, 714
FspBI CTAG 1 cut(s) 599
GluI GCNGC 2 cut(s) 335, 714
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 1 cut(s) 347
HapII CCGG 4 cut(s) 98, 254, 320, 632
HgaI GACGC 2 cut(s) 222, 261
Hin1I GRCGYC 3 cut(s) 188, 233, 272
Hin1II CATG 2 cut(s) 128, 523
HincII GTYRAC 2 cut(s) 243, 442
HindII GTYRAC 2 cut(s) 243, 442
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 92, 454, 545
HpaII CCGG 4 cut(s) 98, 254, 320, 632
Hpy166II GTNNAC 5 cut(s) 243, 421, 442, 610, 758
Hpy188I TCNGA 4 cut(s) 279, 363, 453, 487
Hpy188III TCNNGA 5 cut(s) 39, 192, 458, 540, 632
Hpy8I GTNNAC 5 cut(s) 243, 421, 442, 610, 758
Hpy99I CGWCG 2 cut(s) 244, 343
HpyAV CCTTC 5 cut(s) 144, 336, 358, 376, 629
HpyCH4III ACNGT 2 cut(s) 355, 594
HpyCH4IV ACGT 2 cut(s) 188, 646
HpyCH4V TGCA 4 cut(s) 181, 377, 680, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
HpyF3I CTNAG 3 cut(s) 75, 111, 452
HpySE526I ACGT 2 cut(s) 188, 646
Hsp92I GRCGYC 3 cut(s) 188, 233, 272
Hsp92II CATG 2 cut(s) 128, 523
Kpn2I TCCGGA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 549, 628, 695
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 2 cut(s) 321, 364
MaeI CTAG 1 cut(s) 599
MaeII ACGT 2 cut(s) 188, 646
MalI GATC 3 cut(s) 551, 630, 697
MboI GATC 3 cut(s) 549, 628, 695
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 6 cut(s) 43, 161, 313, 413, 675, 731
MlyI GAGTC 2 cut(s) 86, 463
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 9 cut(s) 60, 120, 141, 149, 155, 198, 209, 337, 474
MroI TCCGGA 1 cut(s) 631
MseI TTAA 1 cut(s) 793
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 4 cut(s) 98, 254, 320, 632
MspR9I CCNGG 2 cut(s) 254, 320
MwoI GCNNNNNNNGC 1 cut(s) 225
NciI CCSGG 2 cut(s) 254, 320
NdeI CATATG 1 cut(s) 211
NdeII GATC 3 cut(s) 549, 628, 695
NlaIII CATG 2 cut(s) 128, 523
NlaIV GGNNCC 5 cut(s) 251, 324, 462, 495, 630
NmeAIII GCCGAG 1 cut(s) 209
NspI RCATGY 1 cut(s) 523
PceI AGGCCT 1 cut(s) 347
PcsI WCGNNNNNNNCGW 3 cut(s) 236, 275, 335
PfeI GAWTC 1 cut(s) 545
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 2 cut(s) 336, 715
PleI GAGTC 2 cut(s) 86, 462
PpsI GAGTC 2 cut(s) 86, 462
Ppu21I YACGTR 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 249
PsiI TTATAA 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 249
PspN4I GGNNCC 5 cut(s) 251, 324, 462, 495, 630
PspPI GGNCC 2 cut(s) 249, 460
PspPPI RGGWCCY 1 cut(s) 249
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 2 cut(s) 581, 591
RsaNI GTAC 2 cut(s) 580, 590
SalI GTCGAC 2 cut(s) 241, 440
SaqAI TTAA 1 cut(s) 793
SatI GCNGC 2 cut(s) 335, 714
Sau3AI GATC 3 cut(s) 549, 628, 695
Sau96I GGNCC 2 cut(s) 249, 460
SchI GAGTC 2 cut(s) 86, 463
ScrFI CCNGG 2 cut(s) 254, 320
SduI GDGCHC 1 cut(s) 311
SetI ASST 8 cut(s) 112, 147, 154, 191, 230, 387, 591, 649
SfaNI GCATC 2 cut(s) 321, 364
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 2 cut(s) 249, 460
Sse9I AATT 6 cut(s) 43, 161, 313, 413, 675, 731
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 5 cut(s) 105, 115, 693, 714, 728
SspMI CTAG 1 cut(s) 599
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 252, 318
TaaI ACNGT 2 cut(s) 355, 594
TaiI ACGT 2 cut(s) 191, 649
TaqI TCGA 7 cut(s) 13, 242, 290, 311, 329, 441, 548
TasI AATT 6 cut(s) 43, 161, 313, 413, 675, 731
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 1 cut(s) 793
Tru9I TTAA 1 cut(s) 793
TscAI CASTG 2 cut(s) 83, 687
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 17, 470
TspGWI ACGGA 2 cut(s) 228, 356
TspRI CASTG 2 cut(s) 83, 687
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 249, 460
XapI RAATTY 4 cut(s) 43, 313, 413, 731
XceI RCATGY 1 cut(s) 523
XmiI GTMKAC 4 cut(s) 242, 420, 441, 757
XspI CTAG 1 cut(s) 599
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.