pycom15g13370

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0028393
Physical Location & Seq
Forward (+)
9131557 .. 9131904
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13370.1

Sequence Viewer

Length: 348 bp
ATGGATGTCGACAAACTTCTGAGTCTCGAGCCTCGCACTTGGCACTTCATTTCCGAGTTGGAGCCGAAAGTCGGGCCGGTAGAACACATGCCTGAAGCGAGAAAATCTGGAGATTTGATCAGTATAATACATGACTTTGAAAAAGTACATCAAGGTACAGTTTCTAGTGGTGGTGGACATAACACGAAAAATGGATCCGGAGGGACATACACGCACCCCACGGTTACAAAACCAAAACTAGCAGTGGTGGATACCGGACCATCAGGGTTGTTTGCCGCCCTTGTTCTTGCGGAATTTGGTGCAAAAGGAGAAATAAGTATACAGCTTTTTATTTTCCTACAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_2 FAD_binding_3 Pyr_redox Pyr_redox_2

Protein Analysis

116

Amino Acids

12.36

Weight (kDa)

6.03

Isoelectric Point (pI)

16.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028393)

Species Orthologous Gene IDs
malus_domestica MD15G1149600.v1.1
pyrus_communis pycom15g13370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 9, 319
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 2 cut(s) 276, 290
AclWI GGATC 2 cut(s) 189, 202
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 2 cut(s) 147, 157
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 189, 202
Ama87I CYCGRG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 74, 257
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 257
BamHI GGATCC 1 cut(s) 194
BccI CCATC 1 cut(s) 268
BciVI GTATCC 1 cut(s) 244
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 165, 239
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 74, 257
BmiI GGNNCC 2 cut(s) 63, 196
BpmI CTGGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 2 cut(s) 197, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 11
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 77, 198, 255
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 2 cut(s) 117, 194
BspACI CCGC 2 cut(s) 276, 290
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 12
BspEI TCCGGA 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 63, 196
BspPI GGATC 2 cut(s) 189, 202
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 117, 194
BssNAI GTATAC 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 160, 223
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 120, 197
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 2 cut(s) 117, 194
BstNSI RCATGY 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BstZ17I GTATAC 1 cut(s) 320
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 74, 257
Csp6I GTAC 2 cut(s) 146, 156
CviAII CATG 2 cut(s) 88, 131
CviJI RGCY 4 cut(s) 31, 64, 76, 325
CviKI_1 RGCY 4 cut(s) 31, 64, 76, 325
CviQI GTAC 2 cut(s) 146, 156
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 119, 196
DpnII GATC 2 cut(s) 117, 194
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 26
FaeI CATG 2 cut(s) 91, 134
FaiI YATR 6 cut(s) 89, 125, 132, 180, 208, 320
FaqI GGGAC 1 cut(s) 217
FatI CATG 2 cut(s) 87, 130
FbaI TGATCA 1 cut(s) 117
FblI GTMKAC 2 cut(s) 9, 319
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 165, 239
GluI GCNGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 76
HapII CCGG 3 cut(s) 77, 198, 255
Hin1II CATG 2 cut(s) 91, 134
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 22
HpaII CCGG 3 cut(s) 77, 198, 255
Hpy166II GTNNAC 3 cut(s) 10, 176, 320
Hpy188I TCNGA 2 cut(s) 21, 55
Hpy188III TCNNGA 3 cut(s) 26, 108, 198
Hpy8I GTNNAC 3 cut(s) 10, 176, 320
HpyCH4III ACNGT 2 cut(s) 160, 223
HpyCH4V TGCA 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 2 cut(s) 91, 134
Kpn2I TCCGGA 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 117, 194
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 90, 93, 105, 211, 249, 268
MaeI CTAG 2 cut(s) 165, 239
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 119, 196
MboI GATC 2 cut(s) 117, 194
MflI RGATCY 1 cut(s) 194
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 2 cut(s) 42, 194
MroI TCCGGA 1 cut(s) 197
MspI CCGG 3 cut(s) 77, 198, 255
NdeII GATC 2 cut(s) 117, 194
NlaIII CATG 2 cut(s) 91, 134
NlaIV GGNNCC 2 cut(s) 63, 196
NspI RCATGY 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 26
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 63, 196
PspPI GGNCC 2 cut(s) 74, 257
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 2 cut(s) 147, 157
RsaNI GTAC 2 cut(s) 146, 156
SalI GTCGAC 1 cut(s) 8
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 117, 194
Sau96I GGNCC 2 cut(s) 74, 257
SchI GAGTC 1 cut(s) 31
SetI ASST 3 cut(s) 157, 327, 347
Sfr274I CTCGAG 1 cut(s) 26
SinI GGWCC 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 293
SsiI CCGC 2 cut(s) 276, 290
SspMI CTAG 2 cut(s) 165, 239
TaaI ACNGT 2 cut(s) 160, 223
TaqI TCGA 2 cut(s) 9, 27
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 145
TauI GCSGC 1 cut(s) 278
TscAI CASTG 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 9, 319
XspI CTAG 2 cut(s) 165, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.