Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028363

Physical Location & Seq

Genomic Coordinates Reverse (-)

14173492 .. 14173957

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1179800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCAAAATGTGGGAGCACGGACAAGTCTTTGGACTTCAATCATTTGTGGGCTTGCAAGGAATGGCAAGACAAGCAAAGCAATCGAGTTCTTCTTGAAAATGGTACAGATTGACATGAAGCCTGATGATTTCACCTTCATTGTTGTCTTAAGTGCTTGTGTTCACAGAGGGTTGGTAGATGAGGGTCGTGAGTTCTTCAACTCCATGAGAAAGATATATGAGAGATTGCACCGAAGTTATAGCACTATGGTTGCCAGATCGACCTTATTGGCCATGTTGGACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

9.25

Isoelectric Point (pI)

20.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	10 - 36	2.6e-06	PPR repeat
PPR_2	PF13041	10 - 54	1.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028363)

Species	Orthologous Gene IDs
malus_domestica	MD15G1179800.v1.1
pyrus_communis	pycom15g16090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	270
AfaI	GTAC	1 cut(s)	105
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	39, 97, 199
Alw21I	GWGCWC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BfrI	CTTAAG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	148
BssMI	GATC	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	284
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	3 cut(s)	115, 205, 274
CviJI	RGCY	3 cut(s)	52, 121, 272
CviKI_1	RGCY	3 cut(s)	52, 121, 272
CviQI	GTAC	1 cut(s)	104
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	270
FaeI	CATG	3 cut(s)	118, 208, 277
FaiI	YATR	7 cut(s)	116, 206, 217, 219, 240, 248, 275
FatI	CATG	3 cut(s)	114, 204, 273
HaeIII	GGCC	1 cut(s)	272
Hin1II	CATG	3 cut(s)	118, 208, 277
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	94, 188
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	4, 56, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	118, 208, 277
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	135, 268
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	2 cut(s)	82, 187
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	2 cut(s)	161, 175
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	118, 208, 277
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	2 cut(s)	137, 266
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	84, 260
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	127, 131
TspGWI	ACGGA	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.