Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028363

Physical Location & Seq

Genomic Coordinates Reverse (-)

11228710 .. 11229250

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAATATGTTAGAAGTGAACTTGGATTCACTACTAAAACTGGAAATGTGGTTGTTGAATATGTATGTAAAACATGGTTATTTGATTGAAGGCCGGAGAATTTTTAATGGGTTTACAATACAACCCATTCATGGGCTTGCAAAGAATGGCAAGACAGGCAAAGGAATCGGGTTGTTCTCGAAAATGGTACAGATTGGCATGAAGCCTGATGATTTCACCTTCATTGTTGTCTTAACTGACTGCGTTCGCAGAGGGTTGGTAGATGAGGGTTGTGAGTTCTTCAACTCCAAGAGAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

8.64

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 82	7.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028363)

Species	Orthologous Gene IDs
malus_domestica	MD15G1179800.v1.1
pyrus_communis	pycom15g16090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	131, 132
AgsI	TTSAA	3 cut(s)	58, 89, 283
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 132
Bse1I	ACTGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	131, 132
BseNI	ACTGG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	131, 132
BsnI	GGCC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	3 cut(s)	74, 131, 199
CviJI	RGCY	3 cut(s)	93, 136, 205
CviKI_1	RGCY	3 cut(s)	93, 136, 205
CviQI	GTAC	1 cut(s)	188
FaeI	CATG	3 cut(s)	77, 134, 202
FaiI	YATR	8 cut(s)	8, 62, 66, 75, 132, 200, 299, 301
FatI	CATG	3 cut(s)	73, 130, 198
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	3 cut(s)	77, 134, 202
HinfI	GANTC	2 cut(s)	26, 165
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	2 cut(s)	19, 114
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	19, 114
HpyAV	CCTTC	2 cut(s)	83, 229
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	77, 134, 202
LpnPI	CCDG	4 cut(s)	26, 107, 141, 219
MboII	GAAGA	1 cut(s)	271
MluCI	AATT	1 cut(s)	99
MnlI	CCTC	2 cut(s)	245, 259
MseI	TTAA	2 cut(s)	105, 233
MspI	CCGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	156
NlaIII	CATG	3 cut(s)	77, 134, 202
PfeI	GAWTC	2 cut(s)	26, 165
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	105, 233
SetI	ASST	1 cut(s)	221
Sse9I	AATT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	26, 165
Tru1I	TTAA	2 cut(s)	105, 233
Tru9I	TTAA	2 cut(s)	105, 233
TspDTI	ATGAA	4 cut(s)	17, 119, 211, 215
XapI	RAATTY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.