MD15G1215600.v1.1

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0028405
Physical Location & Seq
Forward (+)
17399112 .. 17399495
384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1215600.v1.1.491

Sequence Viewer

Length: 384 bp
ATGATACTTAATGAAGTTCTAAGGCTGTATCTGCACGCGATACCTGGGTACCAACACACTTACAAGGAAACCAAAATCAGAGATCTCACTGTTCCGGCAGGAGTTGACATTACTCTCCCAACCCTACTCATTCACCATGATCCCTGGCTGTGGGGTGATGATGCAGGGGAATTCAAGCCGGAGAGATTCTCTGACGGAGTTTCCAGGGCATTGAGGGGCCAGCAGCAAGCGTTCTTTCCATTTGGATGGGGTCCAAGGACATGCATGGGCCAGAATTTCGCCATAATGGGAGCAAAGGTTGCTTTGGCTATGCTTCTGCAACACTTGCTCTCTAATCACATTGCACCAAATTTAGCTAGGGTTGCACAAGCCTGTCAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00908 ko01100 ko01110 map00908 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

128

Amino Acids

14.3

Weight (kDa)

7.87

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 108 2.3e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028405)

Species Orthologous Gene IDs
malus_domestica MD15G1215600.v1.1
pyrus_communis pycom15g19130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 48
AccII CGCG 1 cut(s) 38
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 3 cut(s) 170, 274, 349
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 3 cut(s) 43, 143, 203
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 217, 268
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 3 cut(s) 170, 274, 349
Asp718I GGTACC 1 cut(s) 48
AspS9I GGNCC 3 cut(s) 217, 251, 268
AsuHPI GGTGA 2 cut(s) 125, 167
AvaII GGWCC 1 cut(s) 251
BaeI ACNNNNGTAYC 4 cut(s) 32, 32, 65, 65
BanI GGYRCC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 3 cut(s) 45, 145, 205
BfaI CTAG 1 cut(s) 357
BglII AGATCT 1 cut(s) 82
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 3 cut(s) 45, 145, 205
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 217, 251, 268
BmiI GGNNCC 3 cut(s) 50, 218, 252
BmrFI CCNGG 3 cut(s) 45, 145, 205
BmsI GCATC 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BsaJI CCNNGG 4 cut(s) 44, 143, 204, 254
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 3 cut(s) 45, 145, 205
BseDI CCNNGG 4 cut(s) 44, 143, 204, 254
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 219, 270
BshNI GGYRCC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 95, 179
BslI CCNNNNNNNGG 1 cut(s) 150
BsnI GGCC 2 cut(s) 219, 270
Bsp143I GATC 2 cut(s) 82, 139
BspANI GGCC 2 cut(s) 219, 270
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 50, 218, 252
BspPI GGATC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 4 cut(s) 44, 143, 204, 254
BssMI GATC 2 cut(s) 82, 139
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 3 cut(s) 45, 145, 205
Bst4CI ACNGT 1 cut(s) 91
BstAPI GCANNNNNTGC 2 cut(s) 299, 325
BstC8I GCNNGC 3 cut(s) 36, 221, 228
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 2 cut(s) 85, 142
BstMBI GATC 2 cut(s) 82, 139
BstMWI GCNNNNNNNGC 4 cut(s) 31, 299, 325, 362
BstNI CCWGG 3 cut(s) 45, 145, 205
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 3 cut(s) 43, 143, 203
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 246
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 2 cut(s) 219, 270
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 3 cut(s) 36, 221, 228
Cfr13I GGNCC 3 cut(s) 217, 251, 268
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 137, 261, 265
CviJI RGCY 8 cut(s) 25, 148, 178, 219, 270, 308, 356, 371
CviKI_1 RGCY 8 cut(s) 25, 148, 178, 219, 270, 308, 356, 371
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 84, 141
DpnII GATC 2 cut(s) 82, 139
Eco130I CCWWGG 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 43, 143, 203
EcoT14I CCWWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 3 cut(s) 140, 264, 268
FaiI YATR 5 cut(s) 138, 262, 266, 284, 311
FatI CATG 3 cut(s) 136, 260, 264
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 224
HaeIII GGCC 2 cut(s) 219, 270
HapII CCGG 2 cut(s) 95, 179
Hin1II CATG 3 cut(s) 140, 264, 268
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 186
HpaII CCGG 2 cut(s) 95, 179
HphI GGTGA 2 cut(s) 125, 167
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 80, 193
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 6 cut(s) 34, 164, 264, 319, 344, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 299, 325, 362
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 3 cut(s) 140, 264, 268
KpnI GGTACC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 82, 139
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 357
MalI GATC 2 cut(s) 84, 141
MboI GATC 2 cut(s) 82, 139
MflI RGATCY 1 cut(s) 82
MluCI AATT 3 cut(s) 170, 274, 349
MnlI CCTC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 244
MspI CCGG 2 cut(s) 95, 179
MspR9I CCNGG 3 cut(s) 45, 145, 205
MvaI CCWGG 3 cut(s) 45, 145, 205
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 31, 299, 325, 362
NdeII GATC 2 cut(s) 82, 139
NlaIII CATG 3 cut(s) 140, 264, 268
NlaIV GGNNCC 3 cut(s) 50, 218, 252
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 1 cut(s) 264
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 43, 143, 203
PspGI CCWGG 3 cut(s) 43, 143, 203
PspN4I GGNNCC 3 cut(s) 50, 218, 252
PspPI GGNCC 3 cut(s) 217, 251, 268
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 244
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 2 cut(s) 82, 139
Sau96I GGNCC 3 cut(s) 217, 251, 268
ScrFI CCNGG 3 cut(s) 45, 145, 205
SetI ASST 3 cut(s) 46, 300, 358
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 244
Sse9I AATT 3 cut(s) 170, 274, 349
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 43, 143, 203
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 91
TasI AATT 3 cut(s) 170, 274, 349
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 3 cut(s) 170, 274, 349
XceI RCATGY 1 cut(s) 264
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.