Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028405

Physical Location & Seq

Genomic Coordinates Forward (+)

13638345 .. 13639566

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19130.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAAGGATTATCAATCCTGCTTTCCACTTGGAAAGACTCAAGGGTTTTCAAGCTTCAGAAAGAGCTTCTAGTGGTTGATGACTTTCTAGGAGTGCTCTTGCGGTCTAATAACCAGAAGGATTCATCAGAAAATGCAAGCAACACGAAAAGCAACGAGGTATCTGACACCATGCACCCAGACTGGCAAGAGAAGGCAAGGCAAGAAGTCCTTCAAGTTTGTGGGAAAAATGAACCTGATTTTGAAGCCATAAGCCACTTGAAGATGGTAACCAATATACTTAATGAAGTTCTAAGGCTGTATCTGCAGGCGATACCTGGGTACCAACACACTTACAAGGAAACCAAAATCAGAGATCGATCACTATTCCGGCAGGAGTTGACATTACTCTCCCAACCCTACTCATTCACCATCGATCCCTGGCTGTGGGGTGATGATGCAGGGGAATTCAAGCCGGAGAGATTCTCTGAAGGAGTCTCCAAGGCATCGAGGGGCCACCAGCAAGCGTTCTTTCCATTTGGATGGGGTCCAAGGACATGCATGGGCCAGAATTTCGCCATAATGGGAGCAAAGGTTGCTTTGGCTATACTTCTGCAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

201

Amino Acids

22.91

Weight (kDa)

6.22

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028405)

Species	Orthologous Gene IDs
malus_domestica	MD15G1215600.v1.1
pyrus_communis	pycom15g19130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	321
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	446, 550
AcuI	CTGAAG	2 cut(s)	41, 489
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	5 cut(s)	52, 215, 245, 262, 451
AjnI	CCWGG	2 cut(s)	316, 419
AluBI	AGCT	2 cut(s)	55, 67
AluI	AGCT	2 cut(s)	55, 67
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	2 cut(s)	493, 544
ApoI	RAATTY	2 cut(s)	446, 550
Asp700I	GAANNNNTTC	1 cut(s)	210
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	493, 527, 544
AsuHPI	GGTGA	2 cut(s)	400, 443
AvaII	GGWCC	1 cut(s)	527
BaeI	ACNNNNGTAYC	4 cut(s)	305, 305, 338, 338
BanI	GGYRCC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	3 cut(s)	259, 419, 516
BciT130I	CCWGG	2 cut(s)	318, 421
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	3 cut(s)	71, 89, 601
BfmI	CTRYAG	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	318, 421
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	3 cut(s)	493, 527, 544
BmiI	GGNNCC	3 cut(s)	323, 494, 528
BmrFI	CCNGG	2 cut(s)	318, 421
BmsI	GCATC	2 cut(s)	427, 494
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpuEI	CTTGAG	1 cut(s)	25
Bsa29I	ATCGAT	2 cut(s)	358, 414
BsaJI	CCNNGG	4 cut(s)	317, 419, 480, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	318, 421
BseCI	ATCGAT	2 cut(s)	358, 414
BseDI	CCNNGG	4 cut(s)	317, 419, 480, 530
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	495, 546
BshNI	GGYRCC	1 cut(s)	321
BshVI	ATCGAT	2 cut(s)	358, 414
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	370, 455
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	495, 546
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	355, 359, 415
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	495, 546
BspDI	ATCGAT	2 cut(s)	358, 414
BspLI	GGNNCC	3 cut(s)	323, 494, 528
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	317, 419, 480, 530
BssMI	GATC	3 cut(s)	355, 359, 415
BssT1I	CCWWGG	2 cut(s)	480, 530
Bst2UI	CCWGG	2 cut(s)	318, 421
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	139, 309, 504
BstDEI	CTNAG	1 cut(s)	293
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	527
BstKTI	GATC	3 cut(s)	358, 362, 418
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	355, 359, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 575
BstNI	CCWGG	2 cut(s)	318, 421
BstNSI	RCATGY	1 cut(s)	540
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	316, 419
BstSFI	CTRYAG	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	522
Bsu15I	ATCGAT	2 cut(s)	358, 414
BsuRI	GGCC	2 cut(s)	495, 546
BsuTUI	ATCGAT	2 cut(s)	358, 414
BtsCI	GGATG	1 cut(s)	527
Cac8I	GCNNGC	3 cut(s)	139, 309, 504
Cfr13I	GGNCC	3 cut(s)	493, 527, 544
ClaI	ATCGAT	2 cut(s)	358, 414
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	172, 537, 541
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	3 cut(s)	357, 361, 417
DpnII	GATC	3 cut(s)	355, 359, 415
Eco130I	CCWWGG	2 cut(s)	480, 530
Eco47I	GGWCC	1 cut(s)	527
Eco57I	CTGAAG	2 cut(s)	41, 489
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	316, 419
EcoT14I	CCWWGG	2 cut(s)	480, 530
EcoT22I	ATGCAT	1 cut(s)	542
ErhI	CCWWGG	2 cut(s)	480, 530
FaeI	CATG	3 cut(s)	175, 540, 544
FaiI	YATR	7 cut(s)	173, 251, 278, 538, 542, 560, 587
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	171, 536, 540
FokI	GGATG	1 cut(s)	534
FspBI	CTAG	3 cut(s)	71, 89, 601
HaeIII	GGCC	2 cut(s)	495, 546
HapII	CCGG	2 cut(s)	370, 455
Hin1II	CATG	3 cut(s)	175, 540, 544
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	4 cut(s)	38, 122, 462, 474
HpaII	CCGG	2 cut(s)	370, 455
HphI	GGTGA	2 cut(s)	400, 443
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	5 cut(s)	60, 130, 166, 353, 469
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	4 cut(s)	112, 187, 221, 464
HpyCH4V	TGCA	6 cut(s)	137, 175, 307, 440, 540, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 575
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	175, 540, 544
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	355, 359, 415
LmnI	GCTCC	1 cut(s)	566
LweI	GCATC	2 cut(s)	427, 494
MaeI	CTAG	3 cut(s)	71, 89, 601
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	357, 361, 417
MboI	GATC	3 cut(s)	355, 359, 415
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	446, 550
MlyI	GAGTC	2 cut(s)	32, 483
MnlI	CCTC	2 cut(s)	151, 483
Mph1103I	ATGCAT	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	520
MspI	CCGG	2 cut(s)	370, 455
MspR9I	CCNGG	2 cut(s)	318, 421
MvaI	CCWGG	2 cut(s)	318, 421
MwoI	GCNNNNNNNGC	2 cut(s)	304, 575
NdeII	GATC	3 cut(s)	355, 359, 415
NlaIII	CATG	3 cut(s)	175, 540, 544
NlaIV	GGNNCC	3 cut(s)	323, 494, 528
NsiI	ATGCAT	1 cut(s)	542
NspI	RCATGY	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	122, 462
PleI	GAGTC	2 cut(s)	32, 482
PpsI	GAGTC	2 cut(s)	32, 482
Psp6I	CCWGG	2 cut(s)	316, 419
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	316, 419
PspN4I	GGNNCC	3 cut(s)	323, 494, 528
PspPI	GGNCC	3 cut(s)	493, 527, 544
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	355, 359, 415
Sau96I	GGNCC	3 cut(s)	493, 527, 544
SchI	GAGTC	2 cut(s)	32, 483
ScrFI	CCNGG	2 cut(s)	318, 421
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	57, 69, 162, 238, 319, 576
SfaNI	GCATC	2 cut(s)	427, 494
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	446, 550
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	3 cut(s)	71, 89, 601
StyD4I	CCNGG	2 cut(s)	316, 419
StyI	CCWWGG	2 cut(s)	480, 530
TaqI	TCGA	3 cut(s)	358, 414, 488
TasI	AATT	2 cut(s)	446, 550
TfiI	GAWTC	2 cut(s)	122, 462
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TspDTI	ATGAA	3 cut(s)	114, 246, 300
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	2 cut(s)	446, 550
XceI	RCATGY	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	3 cut(s)	71, 89, 601
Zsp2I	ATGCAT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.