Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028431

Physical Location & Seq

Genomic Coordinates Reverse (-)

20190591 .. 20192632

Gene Structure 2042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1244800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTTGGTGGCCTCCAACAAACCCATGTATATTTGCTAATGAAAAGACAAGCTGCGGAACAAGTTTATCCGGACAGAAATATGATTCAAGAGAGTTTCGGTGAGGGAGAAAAATGTTCGCCTGACCAATGTTGCACACCCGGTGCACCCAGCAGCAACTCCTGTTCTTTGAGCCAAAACTCCCAAGTGATCAGTTCAAAAACAAATGAGCATTCAAGCGCTTTTGCTATTGAGGCTACTTGTAACACCTTGGTAACTTTAGGTGGTGAACGTACAAAAACAATGTGCGGCAGTGAAGCTAGGAAAAAATCAAAAAGGAGTTCCCAACTCTCTTTGAGGTCATTTTTTCAGAAAAGTTCTATCAGTAGCAACAGTGTGAGCATTAATACTGATATTTCTACTAGTCAGAGAAATGTTCCAGATTCTAATCATCTCTCAAATGAAACTCCAATACCAGAAAGTCAAAGCCGCAGTCCCAAGCAGTATGAACTGAACTCTAGTGTATCAAATCAAGATCAGGATGAAGTAGATGCCTGCTCCTTGGACAAAGAGAATAATAATTTTGCGTTATTGGAGTGGCAAAGGTTACAGCAAGTCATGCAGAATAGCATACCAGTTTGCAAGCACCATAGTGAACCTTGTGTTGCTCGGGTTGTGAGCAAGCGAGTTCCTAATTTTGGACGCAGATTCTATGTCTGTGCGCGTGCTGAGATATTGTGGAGTTTATATGTACTCGAGCTAAGTTTGCTGTTGACTACTCGGACCTGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos zf-GRF

Protein Analysis

258

Amino Acids

28.61

Weight (kDa)

7.99

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_GRF	PF06839	205 - 236	3.4e-07	GRF zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028431)

Species	Orthologous Gene IDs
malus_domestica	MD15G1244800.v1.1
pyrus_communis	pycom15g21560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	703
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	56, 288, 469
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	274, 732
AfeI	AGCGCT	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	89, 198, 216
AhlI	ACTAGT	1 cut(s)	401
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	3 cut(s)	53, 299, 739
AluI	AGCT	3 cut(s)	53, 299, 739
Alw21I	GWGCWC	1 cut(s)	148
Alw44I	GTGCAC	1 cut(s)	144
Ama87I	CYCGRG	2 cut(s)	648, 734
Aor13HI	TCCGGA	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	220
AoxI	GGCC	1 cut(s)	10
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	53, 153
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AseI	ATTAAT	1 cut(s)	384
AspLEI	GCGC	2 cut(s)	221, 703
AspS9I	GGNCC	1 cut(s)	762
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	113, 278
AvaI	CYCGRG	2 cut(s)	648, 734
AvaII	GGWCC	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	40, 165
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	300, 402, 498
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	4 cut(s)	54, 154, 289, 469
BlsI	GCNGC	4 cut(s)	55, 155, 290, 470
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	762
BmeT110I	CYCGRG	2 cut(s)	648, 734
BmgT120I	GGNCC	1 cut(s)	762
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	249, 540
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse1I	ACTGG	1 cut(s)	614
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	249, 540
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	1 cut(s)	614
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	40, 165
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	2 cut(s)	648, 734
BsiSI	CCGG	2 cut(s)	71, 141
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	12
BsoBI	CYCGRG	2 cut(s)	648, 734
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	189, 514
BspACI	CCGC	3 cut(s)	56, 288, 469
BspANI	GGCC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	700
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	614
BssECI	CCNNGG	2 cut(s)	249, 540
BssMI	GATC	2 cut(s)	189, 514
BssT1I	CCWWGG	2 cut(s)	249, 540
Bst4CI	ACNGT	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	535, 623, 662, 705
BstDEI	CTNAG	2 cut(s)	708, 740
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	703
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	221, 703
BstKTI	GATC	2 cut(s)	192, 517
BstMBI	GATC	2 cut(s)	189, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 598, 745
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	40, 165
BsuRI	GGCC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	298, 379
Cac8I	GCNNGC	4 cut(s)	535, 623, 662, 705
CfoI	GCGC	2 cut(s)	221, 703
Cfr13I	GGNCC	1 cut(s)	762
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	2 cut(s)	273, 731
CviAII	CATG	2 cut(s)	26, 598
CviJI	RGCY	7 cut(s)	12, 53, 174, 236, 299, 468, 739
CviKI_1	RGCY	7 cut(s)	12, 53, 174, 236, 299, 468, 739
CviQI	GTAC	2 cut(s)	273, 731
DdeI	CTNAG	2 cut(s)	708, 740
DpnI	GATC	2 cut(s)	191, 516
DpnII	GATC	2 cut(s)	189, 514
DraIII	CACNNNGTG	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	249, 540
Eco47I	GGWCC	1 cut(s)	762
Eco47III	AGCGCT	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	648, 734
EcoT14I	CCWWGG	2 cut(s)	249, 540
ErhI	CCWWGG	2 cut(s)	249, 540
FaeI	CATG	2 cut(s)	29, 601
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	2 cut(s)	25, 597
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	54, 154, 289, 469
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	4 cut(s)	54, 154, 289, 469
FspBI	CTAG	3 cut(s)	300, 402, 498
GlaI	GCGC	2 cut(s)	220, 702
GluI	GCNGC	4 cut(s)	54, 154, 289, 469
GsaI	CCCAGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	12
HapII	CCGG	2 cut(s)	71, 141
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	2 cut(s)	221, 703
Hin1II	CATG	2 cut(s)	29, 601
Hin6I	GCGC	2 cut(s)	219, 701
HinP1I	GCGC	2 cut(s)	219, 701
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	3 cut(s)	85, 422, 687
HpaII	CCGG	2 cut(s)	71, 141
HphI	GGTGA	2 cut(s)	113, 278
Hpy166II	GTNNAC	4 cut(s)	146, 269, 635, 753
Hpy188I	TCNGA	3 cut(s)	351, 408, 762
Hpy188III	TCNNGA	5 cut(s)	71, 89, 419, 512, 518
Hpy8I	GTNNAC	4 cut(s)	146, 269, 635, 753
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	135, 146, 601, 621, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 598, 745
HpyF3I	CTNAG	2 cut(s)	708, 740
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	29, 601
HspAI	GCGC	2 cut(s)	219, 701
Kpn2I	TCCGGA	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 514
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	2 cut(s)	40, 165
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	3 cut(s)	300, 402, 498
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	3 cut(s)	242, 253, 585
MalI	GATC	2 cut(s)	191, 516
MboI	GATC	2 cut(s)	189, 514
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	559, 673
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	23, 97, 226, 330
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	2 cut(s)	71, 141
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	3 cut(s)	233, 598, 745
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	189, 514
NlaIII	CATG	2 cut(s)	29, 601
OliI	CACNNNNGTG	1 cut(s)	630
PaeR7I	CTCGAG	1 cut(s)	734
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	85, 422, 687
PkrI	GCNGC	4 cut(s)	55, 155, 290, 470
PshBI	ATTAAT	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	762
PspXI	VCTCGAGB	1 cut(s)	734
RsaI	GTAC	2 cut(s)	274, 732
RsaNI	GTAC	2 cut(s)	273, 731
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	4 cut(s)	54, 154, 289, 469
Sau3AI	GATC	2 cut(s)	189, 514
Sau96I	GGNCC	1 cut(s)	762
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	520
Sfr274I	CTCGAG	1 cut(s)	734
SinI	GGWCC	1 cut(s)	762
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	2 cut(s)	559, 673
SsiI	CCGC	3 cut(s)	56, 288, 469
SspMI	CTAG	3 cut(s)	300, 402, 498
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	2 cut(s)	249, 540
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	735
TasI	AATT	2 cut(s)	559, 673
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	2 cut(s)	291, 471
TfiI	GAWTC	3 cut(s)	85, 422, 687
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	298, 379
TseI	GCWGC	2 cut(s)	53, 153
TspDTI	ATGAA	4 cut(s)	56, 456, 501, 537
TspRI	CASTG	2 cut(s)	298, 379
VneI	GTGCAC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	762
VspI	ATTAAT	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	734
XspI	CTAG	3 cut(s)	300, 402, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.