Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028431

Physical Location & Seq

Genomic Coordinates Reverse (-)

15541393 .. 15542468

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGCAGCAGTGAAGCTAGGAAAAAATCAAAAAGGAGTTCCCAACTCTCTTTGAGGTCATTTTTTCAGAAAAGTTCTATCAGTAGCAACAGTGTGAGCAATAATACTGGTATTTCTACTAGTCAGAGAAATGTTCCAGATTCTAATCATCTCTCAAATGAAACTCCAATACCAGAAAGTCAAAGCGGCAGTCCCAAGCAGTATGAACTGAACTCTAGTGTATCAAATCAAGATCAGGATGAAGTAGATGTCTGCTCCTTGGACAAAGAGAAGAATAATTTTGCGTTATTGGAGTGCCAAAGGTTACAGCAAGTCATGCAGAATAGCATACCAGTTTGCAAGCGCCATAGTGAACCTTGTGTTGCTCGGGTTGTGAGGAAGCGAGGTCCTAATTTTGGACGCAGATTCTCTGTCTGTGCGCGTGCTGAGGGACCTGCATCTAATCCAGAAGCAAATTGTAAGTATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009987 GO:0016020 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Exo_endo_phos zf-GRF

Protein Analysis

157

Amino Acids

17.36

Weight (kDa)

9.21

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028431)

Species	Orthologous Gene IDs
malus_domestica	MD15G1244800.v1.1
pyrus_communis	pycom15g21560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccII	CGCG	1 cut(s)	421
AciI	CCGC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	395
AhlI	ACTAGT	1 cut(s)	119
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AspLEI	GCGC	2 cut(s)	345, 421
AspS9I	GGNCC	2 cut(s)	386, 431
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	2 cut(s)	386, 431
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	18
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	3 cut(s)	18, 120, 216
BfoI	RGCGCY	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	7, 187
BlsI	GCNGC	2 cut(s)	8, 188
Bme18I	GGWCC	2 cut(s)	386, 431
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	386, 431
BmiI	GGNNCC	1 cut(s)	432
BmsI	GCATC	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	112, 332
Bse8I	GATNNNNATC	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	112, 332
BseXI	GCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	177, 444
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	177, 444
BsoBI	CYCGRG	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	432
BspMI	ACCTGC	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	112, 332
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	341, 423
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	345, 421
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 97
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	341, 423
CfoI	GCGC	2 cut(s)	345, 421
Cfr13I	GGNCC	2 cut(s)	386, 431
CseI	GACGC	1 cut(s)	408
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	1 cut(s)	17
CviKI_1	RGCY	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	386, 431
Eco88I	CYCGRG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	386, 431
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	319
FaiI	YATR	4 cut(s)	204, 317, 329, 348
FaqI	GGGAC	2 cut(s)	177, 444
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	7, 187
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	7, 187
FspBI	CTAG	3 cut(s)	18, 120, 216
GlaI	GCGC	2 cut(s)	344, 420
GluI	GCNGC	2 cut(s)	7, 187
HaeII	RGCGCY	1 cut(s)	346
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	2 cut(s)	345, 421
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	2 cut(s)	343, 419
HinP1I	GCGC	2 cut(s)	343, 419
HinfI	GANTC	2 cut(s)	140, 405
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	69, 126
Hpy188III	TCNNGA	4 cut(s)	137, 230, 236, 446
Hpy8I	GTNNAC	1 cut(s)	353
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	6, 319, 339, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	2 cut(s)	343, 419
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	93, 150, 186, 221, 345, 447, 459
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	3 cut(s)	18, 120, 216
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	283
MluCI	AATT	3 cut(s)	277, 391, 454
MnlI	CCTC	4 cut(s)	48, 369, 377, 421
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	140, 405
PkrI	GCNGC	2 cut(s)	8, 188
PpuMI	RGGWCCY	2 cut(s)	386, 431
Psp5II	RGGWCCY	2 cut(s)	386, 431
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	2 cut(s)	386, 431
PspPPI	RGGWCCY	2 cut(s)	386, 431
SatI	GCNGC	2 cut(s)	7, 187
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	386, 431
SetI	ASST	6 cut(s)	19, 59, 305, 358, 388, 436
SfaNI	GCATC	1 cut(s)	446
SinI	GGWCC	2 cut(s)	386, 431
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	3 cut(s)	277, 391, 454
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	3 cut(s)	18, 120, 216
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	3 cut(s)	277, 391, 454
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	140, 405
TscAI	CASTG	2 cut(s)	16, 97
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	174, 219, 255
TspRI	CASTG	2 cut(s)	16, 97
VpaK11BI	GGWCC	2 cut(s)	386, 431
XspI	CTAG	3 cut(s)	18, 120, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.