MD15G1291300.v1.1

Metal transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
26958342 .. 26961711
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1291300.v1.1.491

Sequence Viewer

Length: 1524 bp
ATGGTTTCGACTCACGACCACTCGCAGCCACTGTTACTCGCCTCGGACCAAGACCATCCCGAGGCGGCCTACGACGAGGCCAATAAGGTCCACGTCGTGGGGATCGACGAGGTCGGAGACGACGACTGCAGAACGCCGCCGTTTTCATGGAAGAAGCTGTGGCTGTTTTCCGGACCCGGGTTCCTGATGAGCATCGCGTTTCTGGACCCGGGAAATTTGGAGGGCGATCTTCAGGCGGGGGCGATAGCTGGGAACTCACTGCTGTGGCTACTGATGTGGGCGACGGCGATGGGGCTGTTGGTTCAGCTGCTGTCGGCTCGGCTCGGGGTGGCGACTGGGCGGCACTTGGCGGAGCTGTGTAGGGAGGAGTACCCGACGTGGGCGAGGATGGTGCTGTGGGTGATGGCGGAGCTGGCGCTGATTGGGGCGGATATACAGGAGGTGATTGGGAGTGCGATTGCTATTAAAATTTTGAGTAATGGGGCTTTGCCGCTCTGGTCTGGAGTCCTCATAACTGCTTTGGATTGTTTCATCTTCCTGTTTCTTGAGAACTATGGAGTGAGGAAGCTGGAAGCTGTTTTTGCGGTTCTAATTGCAACAATGGCGCTCTCATTTGCGTGGATGTTCGGTGAAGCCAAGCCTAGCGGCATTGAACTTCTGATTGGTATAATTGTCCCGAAACTTAGCTCCAGAACAATAAAGCAGGCTGTTGGAGTTGTGGGTTGCATAATTATGCCTCACAATGTATTTTTGCATTCAGCTCTAGTACAGTCAAGGGAGGTTGACCACAGCAAGAAAGGACGAGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCAACCGTCGCCCTTGTCATCTCCTTCGTCATCAACCTATTTGTTACCACTGTGTTTGCTAAGGGGTTTTATGGTACGCAGATAGCAGATAGTATAGGACTTGTAAATGCAGGGCAGTATCTTCAAGAGAAGTATGGGGGTGGGTTGTTCCCAATTATGTACATTTGGGGTATCGGGTTATTAGCAGCTGGCCAGAGTAGTACTATTACAGGTACCTATGCTGGGCAGTTCATCATGGGAGGTTTCTTAGACTTGAGATTGAAAAAATGGATGAGGTCATTGATTACACGAAGCTGTGCAATTATCCCAACTATAACAGTGGCTCTTATATTTGACTCCTCGGAGGACACACTGGATGTTTTAAATGAGTGGCTTAATGTGTTACAGTCAGTTCAGATCCCTTTTGCACTTATTCCCTTGCTTTTCTTGGTGTCAAAGGAGCAACTCATGGGATCTTTTAAAATTGGCCCTGTTCTCAAGATGGTTGCATGGCTTGTGGCGGCCCTAGTGATGGTAATCAACGGATACCTTCTGTTCGACTTCTTCGCCTCTGAAGTGACTGGGTGGTTGTTTAGTGTCGGAGTGTTTGCTTTTACTGCCGGGTATGTAGCATTTATAGTTTACCTTGTGTTGCGGGACATCAACGTATCAAGTTTGTGTGGATCAAGGAGATCGCAAATACAGTGA

Protein Analysis

508

Amino Acids

55.44

Weight (kDa)

5.43

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 74 - 435 7.1e-112 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1049
AccB1I GGYRCC 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 493
AccII CGCG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 170
AclWI GGATC 4 cut(s) 110, 1228, 1297, 1507
AcoI YGGCCR 1 cut(s) 1027
AcsI RAATTY 2 cut(s) 214, 468
AcuI CTGAAG 2 cut(s) 215, 1410
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 6 cut(s) 371, 768, 913, 998, 1039, 1051
AfiI CCNNNNNNNGG 6 cut(s) 61, 97, 177, 379, 1059, 1348
AgsI TTSAA 4 cut(s) 653, 809, 962, 1099
AjiI CACGTC 2 cut(s) 94, 378
AjuI GAANNNNNNNTTGG 2 cut(s) 645, 677
AleI CACNNNNGTG 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 4 cut(s) 110, 1228, 1297, 1507
AlwNI CAGNNNCTG 2 cut(s) 31, 310
Ama87I CYCGRG 4 cut(s) 59, 176, 208, 323
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 5 cut(s) 66, 78, 1027, 1303, 1338
ApeKI GCWGC 3 cut(s) 25, 307, 1022
ApoI RAATTY 2 cut(s) 214, 468
Asp718I GGTACC 1 cut(s) 1049
AspLEI GCGC 2 cut(s) 418, 607
AspS9I GGNCC 6 cut(s) 46, 88, 173, 205, 1304, 1339
AsuC2I CCSGG 5 cut(s) 177, 178, 209, 210, 1438
AsuHPI GGTGA 3 cut(s) 412, 454, 641
AvaI CYCGRG 4 cut(s) 59, 176, 208, 323
AvaII GGWCC 4 cut(s) 46, 88, 173, 205
BalI TGGCCA 1 cut(s) 1029
BanI GGYRCC 1 cut(s) 1049
BbvI GCAGC 3 cut(s) 37, 294, 1034
BccI CCATC 6 cut(s) 63, 283, 382, 397, 1312, 1342
BceAI ACGGC 2 cut(s) 124, 300
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciVI GTATCC 1 cut(s) 1355
BcnI CCSGG 5 cut(s) 177, 178, 209, 210, 1438
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 3 cut(s) 642, 764, 1343
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 2 cut(s) 419, 608
BfuI GTATCC 1 cut(s) 1355
BisI GCNGC 9 cut(s) 26, 66, 137, 308, 341, 491, 646, 1023, 1338
BlsI GCNGC 9 cut(s) 27, 67, 138, 309, 342, 492, 647, 1024, 1339
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 5 cut(s) 177, 178, 209, 210, 1438
Bme18I GGWCC 4 cut(s) 46, 88, 173, 205
BmeT110I CYCGRG 4 cut(s) 59, 176, 208, 323
BmgBI CACGTC 2 cut(s) 94, 378
BmgT120I GGNCC 6 cut(s) 46, 88, 173, 205, 1304, 1339
BmiI GGNNCC 4 cut(s) 175, 182, 207, 1051
BmrFI CCNGG 5 cut(s) 177, 178, 209, 210, 1438
BmrI ACTGGG 2 cut(s) 345, 1407
BmsI GCATC 1 cut(s) 201
BmuI ACTGGG 2 cut(s) 345, 1407
BpmI CTGGAG 2 cut(s) 522, 673
Bpu10I CCTNAGC 1 cut(s) 897
BpuEI CTTGAG 3 cut(s) 566, 1111, 1298
BpuMI CCSGG 5 cut(s) 177, 178, 209, 210, 1438
BsaBI GATNNNNATC 2 cut(s) 191, 1352
BsaJI CCNNGG 5 cut(s) 42, 60, 176, 208, 1176
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 97, 177, 379, 1059, 1348
Bse1I ACTGG 3 cut(s) 340, 1194, 1402
Bse8I GATNNNNATC 2 cut(s) 191, 1352
BseAI TCCGGA 1 cut(s) 170
BseDI CCNNGG 5 cut(s) 42, 60, 176, 208, 1176
BseGI GGATG 5 cut(s) 55, 393, 627, 1113, 1198
BseJI GATNNNNATC 2 cut(s) 191, 1352
BseLI CCNNNNNNNGG 6 cut(s) 61, 97, 177, 379, 1059, 1348
BseNI ACTGG 3 cut(s) 340, 1194, 1402
BseRI GAGGAG 2 cut(s) 380, 1165
BseXI GCAGC 3 cut(s) 37, 294, 1034
BseYI CCCAGC 2 cut(s) 248, 1058
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 5 cut(s) 68, 80, 1029, 1305, 1340
BshNI GGYRCC 1 cut(s) 1049
BsiHKCI CYCGRG 4 cut(s) 59, 176, 208, 323
BsiSI CCGG 4 cut(s) 171, 177, 209, 1437
BslFI GGGAC 2 cut(s) 659, 1487
BslI CCNNNNNNNGG 6 cut(s) 61, 97, 177, 379, 1059, 1348
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 659, 1487
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 5 cut(s) 68, 80, 1029, 1305, 1340
BsoBI CYCGRG 4 cut(s) 59, 176, 208, 323
Bsp13I TCCGGA 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
BspANI GGCC 5 cut(s) 68, 80, 1029, 1305, 1340
BspEI TCCGGA 1 cut(s) 170
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 4 cut(s) 175, 182, 207, 1051
BspMAI CTGCAG 1 cut(s) 131
BspPI GGATC 4 cut(s) 110, 1228, 1297, 1507
BspT107I GGYRCC 1 cut(s) 1049
BsrBI CCGCTC 1 cut(s) 493
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 3 cut(s) 340, 1194, 1402
BssECI CCNNGG 5 cut(s) 42, 60, 176, 208, 1176
BssMI GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
Bst4CI ACNGT 7 cut(s) 33, 771, 844, 889, 1156, 1224, 1521
BstAUI TGTACA 1 cut(s) 996
BstC8I GCNNGC 3 cut(s) 414, 705, 1027
BstDEI CTNAG 3 cut(s) 683, 897, 1084
BstF5I GGATG 5 cut(s) 55, 393, 627, 1113, 1198
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 2 cut(s) 419, 608
BstHHI GCGC 2 cut(s) 418, 607
BstKTI GATC 6 cut(s) 105, 229, 1236, 1292, 1502, 1511
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
BstMWI GCNNNNNNNGC 4 cut(s) 413, 581, 602, 1433
BstSCI CCNGG 5 cut(s) 175, 176, 207, 208, 1436
BstSFI CTRYAG 1 cut(s) 127
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 37, 294, 1034
BstX2I RGATCY 2 cut(s) 1233, 1289
BstYI RGATCY 2 cut(s) 1233, 1289
BsuI GTATCC 1 cut(s) 1355
BsuRI GGCC 5 cut(s) 68, 80, 1029, 1305, 1340
BtgZI GCGATG 2 cut(s) 178, 302
BtrI CACGTC 2 cut(s) 94, 378
BtsCI GGATG 5 cut(s) 55, 393, 627, 1113, 1198
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 5 cut(s) 29, 257, 885, 1161, 1187
Cac8I GCNNGC 3 cut(s) 414, 705, 1027
CaiI CAGNNNCTG 2 cut(s) 31, 310
CfoI GCGC 2 cut(s) 418, 607
Cfr13I GGNCC 6 cut(s) 46, 88, 173, 205, 1304, 1339
Cfr9I CCCGGG 2 cut(s) 176, 208
Csp6I GTAC 6 cut(s) 370, 767, 912, 997, 1038, 1050
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 4 cut(s) 147, 1072, 1285, 1326
CviQI GTAC 6 cut(s) 370, 767, 912, 997, 1038, 1050
DdeI CTNAG 3 cut(s) 683, 897, 1084
DpnI GATC 6 cut(s) 104, 228, 1235, 1291, 1501, 1510
DpnII GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
DraI TTTAAA 2 cut(s) 1200, 1297
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 1027
EciI GGCGGA 3 cut(s) 365, 422, 443
Eco47I GGWCC 4 cut(s) 46, 88, 173, 205
Eco57I CTGAAG 2 cut(s) 215, 1410
Eco88I CYCGRG 4 cut(s) 59, 176, 208, 323
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 150, 1075, 1288, 1329
FaqI GGGAC 2 cut(s) 659, 1487
FatI CATG 4 cut(s) 146, 1071, 1284, 1325
FauI CCCGC 2 cut(s) 229, 1464
Fnu4HI GCNGC 9 cut(s) 26, 66, 137, 308, 341, 491, 646, 1023, 1338
FokI GGATG 5 cut(s) 42, 400, 634, 1120, 1205
Fsp4HI GCNGC 9 cut(s) 26, 66, 137, 308, 341, 491, 646, 1023, 1338
FspBI CTAG 3 cut(s) 642, 764, 1343
GlaI GCGC 2 cut(s) 417, 606
GluI GCNGC 9 cut(s) 26, 66, 137, 308, 341, 491, 646, 1023, 1338
GsaI CCCAGC 2 cut(s) 252, 1062
GsuI CTGGAG 2 cut(s) 522, 673
HaeII RGCGCY 2 cut(s) 419, 608
HaeIII GGCC 5 cut(s) 68, 80, 1029, 1305, 1340
HapII CCGG 4 cut(s) 171, 177, 209, 1437
HhaI GCGC 2 cut(s) 418, 607
Hin1II CATG 4 cut(s) 150, 1075, 1288, 1329
Hin6I GCGC 2 cut(s) 416, 605
HinP1I GCGC 2 cut(s) 416, 605
HincII GTYRAC 2 cut(s) 784, 840
HindII GTYRAC 2 cut(s) 784, 840
HinfI GANTC 4 cut(s) 10, 504, 836, 1172
HpaII CCGG 4 cut(s) 171, 177, 209, 1437
HphI GGTGA 3 cut(s) 412, 454, 641
Hpy166II GTNNAC 4 cut(s) 91, 784, 840, 1459
Hpy188I TCNGA 7 cut(s) 46, 116, 660, 1180, 1233, 1390, 1418
Hpy8I GTNNAC 4 cut(s) 91, 784, 840, 1459
Hpy99I CGWCG 7 cut(s) 77, 98, 110, 125, 286, 379, 848
HpyAV CCTTC 2 cut(s) 871, 1376
HpyCH4III ACNGT 7 cut(s) 33, 771, 844, 889, 1156, 1224, 1521
HpyCH4IV ACGT 3 cut(s) 93, 377, 1482
HpyCH4V TGCA 8 cut(s) 129, 596, 726, 754, 947, 1136, 1244, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 581, 602, 1433
HpyF3I CTNAG 3 cut(s) 683, 897, 1084
HpySE526I ACGT 3 cut(s) 93, 377, 1482
Hsp92II CATG 4 cut(s) 150, 1075, 1288, 1329
HspAI GCGC 2 cut(s) 416, 605
Kpn2I TCCGGA 1 cut(s) 170
KpnI GGTACC 1 cut(s) 1053
Kzo9I GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
LmnI GCTCC 4 cut(s) 352, 409, 692, 1276
Lsp1109I GCAGC 3 cut(s) 37, 294, 1034
LweI GCATC 1 cut(s) 201
MaeI CTAG 3 cut(s) 642, 764, 1343
MaeII ACGT 3 cut(s) 93, 377, 1482
MaeIII GTNAC 4 cut(s) 33, 880, 1218, 1393
MalI GATC 6 cut(s) 104, 228, 1235, 1291, 1501, 1510
MbiI CCGCTC 1 cut(s) 493
MboI GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
MboII GAAGA 5 cut(s) 163, 221, 526, 950, 1372
MflI RGATCY 2 cut(s) 1233, 1289
MlsI TGGCCA 1 cut(s) 1029
MluCI AATT 9 cut(s) 214, 468, 591, 669, 729, 820, 990, 1137, 1299
MluNI TGGCCA 1 cut(s) 1029
MlyI GAGTC 4 cut(s) 4, 513, 845, 1166
MmeI TCCRAC 3 cut(s) 94, 691, 1396
Mox20I TGGCCA 1 cut(s) 1029
MroI TCCGGA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 1029
MseI TTAA 4 cut(s) 465, 1199, 1212, 1296
MslI CAYNNNNRTG 3 cut(s) 262, 616, 731
Msp20I TGGCCA 1 cut(s) 1029
MspA1I CMGCKG 2 cut(s) 307, 1025
MspI CCGG 4 cut(s) 171, 177, 209, 1437
MspR9I CCNGG 5 cut(s) 177, 178, 209, 210, 1438
Mva1269I GAATGC 1 cut(s) 754
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 4 cut(s) 413, 581, 602, 1433
NciI CCSGG 5 cut(s) 177, 178, 209, 210, 1438
NdeII GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
NlaIII CATG 4 cut(s) 150, 1075, 1288, 1329
NlaIV GGNNCC 4 cut(s) 175, 182, 207, 1051
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 1393
OliI CACNNNNGTG 1 cut(s) 262
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 120
PctI GAATGC 1 cut(s) 754
PflFI GACNNNGTC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 9 cut(s) 27, 67, 138, 309, 342, 492, 647, 1024, 1339
PleI GAGTC 4 cut(s) 4, 512, 844, 1166
PpsI GAGTC 4 cut(s) 4, 512, 844, 1166
PspFI CCCAGC 2 cut(s) 248, 1058
PspN4I GGNNCC 4 cut(s) 175, 182, 207, 1051
PspPI GGNCC 6 cut(s) 46, 88, 173, 205, 1304, 1339
PstI CTGCAG 1 cut(s) 131
PstNI CAGNNNCTG 2 cut(s) 31, 310
PsuI RGATCY 2 cut(s) 1233, 1289
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 2 cut(s) 307, 1025
RsaI GTAC 6 cut(s) 371, 768, 913, 998, 1039, 1051
RsaNI GTAC 6 cut(s) 370, 767, 912, 997, 1038, 1050
RseI CAYNNNNRTG 3 cut(s) 262, 616, 731
SaqAI TTAA 4 cut(s) 465, 1199, 1212, 1296
SatI GCNGC 9 cut(s) 26, 66, 137, 308, 341, 491, 646, 1023, 1338
Sau3AI GATC 6 cut(s) 102, 226, 1233, 1289, 1499, 1508
Sau96I GGNCC 6 cut(s) 46, 88, 173, 205, 1304, 1339
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 4 cut(s) 4, 513, 845, 1166
ScrFI CCNGG 5 cut(s) 177, 178, 209, 210, 1438
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 4 cut(s) 46, 88, 173, 205
SmaI CCCGGG 2 cut(s) 178, 210
SmiMI CAYNNNNRTG 3 cut(s) 262, 616, 731
SmlI CTYRAG 3 cut(s) 545, 1090, 1313
SmoI CTYRAG 3 cut(s) 545, 1090, 1313
Sse9I AATT 9 cut(s) 214, 468, 591, 669, 729, 820, 990, 1137, 1299
SspMI CTAG 3 cut(s) 642, 764, 1343
StyD4I CCNGG 5 cut(s) 175, 176, 207, 208, 1436
TaaI ACNGT 7 cut(s) 33, 771, 844, 889, 1156, 1224, 1521
TaiI ACGT 3 cut(s) 96, 380, 1485
TaqI TCGA 3 cut(s) 8, 105, 1374
TasI AATT 9 cut(s) 214, 468, 591, 669, 729, 820, 990, 1137, 1299
TatI WGTACW 3 cut(s) 766, 996, 1037
TauI GCSGC 6 cut(s) 68, 139, 343, 493, 648, 1340
Tru1I TTAA 4 cut(s) 465, 1199, 1212, 1296
Tru9I TTAA 4 cut(s) 465, 1199, 1212, 1296
TscAI CASTG 5 cut(s) 36, 264, 892, 1161, 1194
TseFI GTSAC 1 cut(s) 1393
TseI GCWGC 3 cut(s) 25, 307, 1022
Tsp45I GTSAC 1 cut(s) 1393
TspDTI ATGAA 3 cut(s) 135, 520, 1057
TspGWI ACGGA 1 cut(s) 1374
TspMI CCCGGG 2 cut(s) 176, 208
TspRI CASTG 5 cut(s) 36, 264, 892, 1161, 1194
Tth111I GACNNNGTC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 4 cut(s) 46, 88, 173, 205
XapI RAATTY 2 cut(s) 214, 468
XmaI CCCGGG 2 cut(s) 176, 208
XspI CTAG 3 cut(s) 642, 764, 1343
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.