Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011831

Physical Location & Seq

Genomic Coordinates Forward (+)

12364875 .. 12365498

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGAAGGGAAGGTTAATCCGTCTCAACGATCACTGGGTCTCCATCGCTATAGACAATCTTGATTCTTTTGGGGATGTTGGCTACCTAGACTTCAGGTTTCTCGATCAACTCTTACCCCACTGCTCCAAAGATCAGTTGATTCACATCGAGAAGAGCACAAAAGATGTAGACCTGACTCCCATCACCGATAAGCTGTGGAAGAGGTTCTTCCAGAGAGACTTCGGTGGCAAAGCCACCGATGAGGTGATCCAGAAGATGAAGATCAAGAAAATGAGTTTCAAGTGGTCGGAGTTGTACGAGGCCAAGTCGAAGAGGATGGAGGAGGATGAGAAAGAAGTAGGTGAAAGCTTAAAGAAGCTGTATGAGAAAGAAGCTGCTCGGAAACAAAGCCGGCAAGTTAAGGTGTTGGACAAGGTTCCACCTTCTTCGTCAAGCAACAAAAGAACTGGGTCCAAGAAAGAGAGCAAACTGATGAGCAAATTAAGGAAACAACATCTGAATTGTCTGGAAGTGAGAAACAATGAAGCTATGAAGATGAAGAGAACTGCTGCCAAGTGTTCTGGTCTCATCAGGAAGCCAAGAACGAGTATTAAAGCTAGGGAAGAAATCTGCTGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009893 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0019222 GO:0030001 GO:0030054 GO:0031090 GO:0031323 GO:0031325 GO:0042221 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0065007 GO:0065008 GO:0098542 GO:0098588 GO:0098771 GO:0098805 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

207

Amino Acids

24.15

Weight (kDa)

9.65

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elongin_A	PF06881	25 - 133	2.8e-23	RNA polymerase II transcription factor SIII (Elongin) subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23150 AT5G67330
fragaria_vesca	FvH4_1g17000 FvH4_1g17000
malus_domestica	MD02G1180400.v1.1 MD15G1291300.v1.1
prunus_persica	Prupe.6G225900_v2.0.a1
pyrus_communis	pycom02g14620 pycom15g25480
rosa_chinensis	RchiOBHm_Chr2g0107161
rosa_laevigata	RLG00000017556
rosa_multiflora	Rmu_sc0002945.1_g000015
rosa_roxburghii	Rroxscaffold_2G00136580
rosa_rugosa	Rorug02G0140400
rosa_samantha	Rh2AG191300 Rh2BG203100 Rh2CG196500 Rh2DG198500
rosa_wichuraiana	Rw2G015110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	6 cut(s)	196, 351, 361, 377, 530, 599
AluI	AGCT	6 cut(s)	196, 351, 361, 377, 530, 599
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	4 cut(s)	29, 46, 213, 572
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	377, 551
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	178, 259, 356
AvaII	GGWCC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	364, 538
BccI	CCATC	3 cut(s)	53, 191, 313
BcoDI	GTCTC	4 cut(s)	29, 46, 213, 572
BfaI	CTAG	2 cut(s)	89, 600
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	378, 552
BlsI	GCNGC	2 cut(s)	379, 553
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	2 cut(s)	420, 454
BmrI	ACTGGG	2 cut(s)	46, 459
BmuI	ACTGGG	2 cut(s)	46, 459
BsaBI	GATNNNNATC	2 cut(s)	146, 263
BsaI	GGTCTC	2 cut(s)	46, 572
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	2 cut(s)	41, 454
Bse8I	GATNNNNATC	2 cut(s)	146, 263
BseGI	GGATG	3 cut(s)	82, 324, 334
BseJI	GATNNNNATC	2 cut(s)	146, 263
BseNI	ACTGG	2 cut(s)	41, 454
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	364, 538
BshFI	GGCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	603
BsmAI	GTCTC	4 cut(s)	29, 46, 213, 572
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	2 cut(s)	46, 572
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	31, 106, 133, 249, 264
BspANI	GGCC	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	420, 454
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	149
BspTNI	GGTCTC	2 cut(s)	46, 572
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	41, 454
BssAI	RCCGGY	1 cut(s)	393
BssMI	GATC	5 cut(s)	31, 106, 133, 249, 264
Bst6I	CTCTTC	4 cut(s)	149, 197, 308, 536
BstC8I	GCNNGC	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	82, 324, 334
BstKTI	GATC	5 cut(s)	34, 109, 136, 252, 267
BstMAI	GTCTC	4 cut(s)	29, 46, 213, 572
BstMBI	GATC	5 cut(s)	31, 106, 133, 249, 264
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	364, 538
BsuRI	GGCC	1 cut(s)	305
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	82, 324, 334
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	34, 121
Cac8I	GCNNGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	298
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	5 cut(s)	33, 108, 135, 251, 266
DpnII	GATC	5 cut(s)	31, 106, 133, 249, 264
Eam1104I	CTCTTC	4 cut(s)	149, 197, 308, 536
EarI	CTCTTC	4 cut(s)	149, 197, 308, 536
Eco31I	GGTCTC	2 cut(s)	46, 572
Eco47I	GGWCC	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	29
FaiI	YATR	3 cut(s)	53, 366, 533
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	603
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	378, 552
FokI	GGATG	3 cut(s)	89, 331, 341
Fsp4HI	GCNGC	2 cut(s)	378, 552
FspBI	CTAG	2 cut(s)	89, 600
GluI	GCNGC	2 cut(s)	378, 552
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	3 cut(s)	65, 142, 178
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	3 cut(s)	178, 259, 356
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	292, 384, 501
Hpy188III	TCNNGA	8 cut(s)	62, 104, 151, 214, 253, 268, 509, 574
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	6, 435
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
Kzo9I	GATC	5 cut(s)	31, 106, 133, 249, 264
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	131
Lsp1109I	GCAGC	2 cut(s)	364, 538
MaeI	CTAG	2 cut(s)	89, 600
MalI	GATC	5 cut(s)	33, 108, 135, 251, 266
MboI	GATC	5 cut(s)	31, 106, 133, 249, 264
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	2 cut(s)	482, 502
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	270, 390
MnlI	CCTC	6 cut(s)	198, 238, 295, 309, 316, 319
MroNI	GCCGGC	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	5 cut(s)	17, 353, 402, 485, 594
MspI	CCGG	1 cut(s)	394
NaeI	GCCGGC	1 cut(s)	395
NdeII	GATC	5 cut(s)	31, 106, 133, 249, 264
NgoMIV	GCCGGC	1 cut(s)	393
NlaIV	GGNNCC	2 cut(s)	420, 454
PciSI	GCTCTTC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	65, 142
PkrI	GCNGC	2 cut(s)	379, 553
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	420, 454
PspPI	GGNCC	1 cut(s)	453
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	17, 353, 402, 485, 594
SatI	GCNGC	2 cut(s)	378, 552
Sau3AI	GATC	5 cut(s)	31, 106, 133, 249, 264
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	453
Sse9I	AATT	2 cut(s)	482, 502
SspMI	CTAG	2 cut(s)	89, 600
TaqI	TCGA	3 cut(s)	105, 150, 311
TasI	AATT	2 cut(s)	482, 502
TfiI	GAWTC	2 cut(s)	65, 142
Tru1I	TTAA	5 cut(s)	17, 353, 402, 485, 594
Tru9I	TTAA	5 cut(s)	17, 353, 402, 485, 594
TscAI	CASTG	2 cut(s)	41, 128
TseI	GCWGC	2 cut(s)	377, 551
TspDTI	ATGAA	4 cut(s)	275, 540, 548, 554
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	41, 128
VpaK11BI	GGWCC	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	89, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.