MD15G1300100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
28561166 .. 28563288
2123 bp
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UTR
Exon/CDS
Intron
MD15G1300100.v1.1.491

Sequence Viewer

Length: 186 bp
ATGTTAGCGGCAGTTCCTCTTAAAGTTGATGAAAGAGTAAACTTGGTGGCGCATAATCGCCAGGCACTCCAAATTTTATATAGCTCTTATGAATTTGGGATATTTCAGGGAATTCACAAGCTGACCAACAATATTACTTTTTTACGATACATGAACAAGATTGGGACTACAAAGTGGAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.09

Weight (kDa)

9.99

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024284)

Species Orthologous Gene IDs
malus_domestica MD15G1300100.v1.1
pyrus_communis pycom01g00200 pycom02g18920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 3 cut(s) 72, 92, 111
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 84, 121
AluI AGCT 2 cut(s) 84, 121
ApoI RAATTY 3 cut(s) 72, 92, 111
AspLEI GCGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 62
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 178
BspACI CCGC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
CfoI GCGC 1 cut(s) 52
CviAII CATG 1 cut(s) 151
CviJI RGCY 3 cut(s) 84, 121, 181
CviKI_1 RGCY 3 cut(s) 84, 121, 181
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 154
FaiI YATR 5 cut(s) 54, 79, 81, 90, 152
FaqI GGGAC 1 cut(s) 178
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 40
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 50
LpnPI CCDG 3 cut(s) 47, 74, 92
MluCI AATT 3 cut(s) 72, 92, 111
MnlI CCTC 1 cut(s) 27
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NlaIII CATG 1 cut(s) 154
PkrI GCNGC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 62
SetI ASST 2 cut(s) 86, 123
SgeI CNNG 7 cut(s) 55, 73, 74, 119, 130, 163, 169
Sse9I AATT 3 cut(s) 72, 92, 111
SsiI CCGC 1 cut(s) 8
SspI AATATT 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 60
TasI AATT 3 cut(s) 72, 92, 111
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 45, 105, 167
XapI RAATTY 3 cut(s) 72, 92, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.